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meteR (version 1.1)

Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

Description

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

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Version

Install

install.packages('meteR')

Monthly Downloads

170

Version

1.1

License

GPL-2

Issues

Pull Requests

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Repository

https://github.com/cmerow/meteR

Maintainer

Cory Merow

Last Published

February 26th, 2016

Functions in meteR (1.1)

empiricalSAR

Empirical SAR or EAR

downscaleSAR

Downscale the species area relationship (SAR) or endemics area relationship (EAR)

meteR-package

Analyses with the Maximum Entropy Theory of Ecology (METE)

logLikZ

Compute log-likelihood z-score

predictESF

residuals.meteDist

Compute residuals between METE predictions and date of a meteDist object

residuals.meteRelat

Compute residuals between METE predictions and date of a meteRelat object

ssad

Species Spatial Abundance Distribution

metePsi

Equation of the PMF for the METE individual metabolic rate distribution

upscaleSAR

upscale SAR

plot.meteRelat

Plot predicted METE relationships and associated observed relationship seen in data

mseZ

Compute z-score of mean squared error

print.damuth

meteDist2Rank

metePhi

Equation of the METE species abundance distribution

meteNu

Equation of the PMF for the METE species metabolic rate distribution

print.sar

logLik.meteDist

Compute log-likelihood of a meteDist object

plot.sar

Plot the species abundance distribution (SAR), i.e. objects of class sar

spd

Species Power Distribution

print.meteESF

ebar

Relationship between mean metabolic rate ($\bar{\epsilon}$) and abundance

sad

METE species abundance distribution

sipd

Generic method to obtain the species-level individual power distribution (SIPD)

plot.damuth

Plot the relationship between abundance and metabolic rate, i.e. objects of class damuth

mse

Computes mean squared error for rank or cdf

metePi

Equation of the PMF of the METE spatial species abundance distribution

meteESF

arth

Arthropod community abundance data

meteSSF

ipd

Individual Power Distribution

anbo

Community abundance data for a desert grassland (anza borrego)

print.meteRelat

Print summaries of meteRelat objects

meteSAR

Compute METE species area relationship (SAR)

meteTheta

Equation of the PMF for the METE Intra-specific metabolic rate distribution

plot.meteDist

Plot METE distributions and associated data

print.meteDist

Print summaries of meteDist objects