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meteR (version 1.2)

Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

Description

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

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Version

Install

install.packages('meteR')

Monthly Downloads

182

Version

1.2

License

GPL-2

Issues

1

Pull Requests

0

Stars

11

Forks

5

Maintainer

Cory Merow

Last Published

June 27th, 2016

Functions in meteR (1.2)

logLik.meteDist

Compute log-likelihood of a meteDist object
meteDist2Rank

meteDist2Rank
ipd

Individual Power Distribution
logLikZ

Compute log-likelihood z-score
ebar

Relationship between mean metabolic rate ($\bar{\epsilon}$) and abundance
anbo

Community abundance data for a desert grassland (anza borrego)
meteESF

meteESF
empiricalSAR

Empirical SAR or EAR
downscaleSAR

Downscale the species area relationship (SAR) or endemics area relationship (EAR)
arth

Arthropod community abundance data
mseZ

Compute z-score of mean squared error
meteNu

Equation of the PMF for the METE species metabolic rate distribution
meteSAR

Compute METE species area relationship (SAR)
metePi

Equation of the PMF of the METE spatial species abundance distribution
meteTheta

Equation of the PMF for the METE Intra-specific metabolic rate distribution
meteR-package

Analyses with the Maximum Entropy Theory of Ecology (METE)
meteSSF

meteSSF
plot.damuth

Plot the relationship between abundance and metabolic rate, i.e. objects of class damuth
mse

Computes mean squared error for rank or cdf
metePsi

Equation of the PMF for the METE individual metabolic rate distribution
print.sar

print.sar
print.meteESF

print.meteESF
plot.meteDist

Plot METE distributions and associated data
plot.sar

Plot the species abundance distribution (SAR), i.e. objects of class sar
print.meteRelat

Print summaries of meteRelat objects
predictESF

predictESF
print.damuth

print.damuth
residuals.meteDist

Compute residuals between METE predictions and data of a meteDist object
print.meteDist

Print summaries of meteDist objects
plot.meteRelat

Plot predicted METE relationships and associated observed relationship seen in data
sipd

Generic method to obtain the species-level individual power distribution (SIPD)
residuals.meteRelat

Compute residuals between METE predictions and date of a meteRelat object
sad

METE species abundance distribution
spd

Species Power Distribution
ssad

Species Spatial Abundance Distribution
upscaleSAR

upscale SAR