Calculating amount of CpGs between alignments border
Usage
cgInAlign(methData)
Arguments
methData
An object of type list that contains information on the pairwise alignments and methylation status of all CpG motifs under study. Created by applying MethAlignNW()
Value
Integer vector of CpG amount
Details
This function computes the amount of CpGs on the positions corresponds to genomic sequence over all sequences under study between the alignment borders.