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methVisual (version 1.24.0)

Methods for visualization and statistics on DNA methylation data

Description

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

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Version

Version

1.24.0

License

GPL (>= 2)

Maintainer

Arie Zackay

Last Published

February 15th, 2017

Functions in methVisual (1.24.0)

MethylQC

Quality controle (QC) on Methylation Data
MethAlignNW

Summary of methylation states
methWhitneyUTest

Mann Whitney U-Test on methylation data
methData

BiQAnalyzer dataset
MethDataInput

Sequences match control
makeTabFilePath

Tab delimited text file
matrixSNP

Correlation between methylation states
selectRefSeq

Uploading genomic sequence
cgInAlign

Amount of CpGs
cgMethFinder

Methylation status
readBisulfFASTA

Read multiple FASTA file
Cooccurrence

Visualization of binary methylation data
findNonAligned

Aligned CpG positions
methCA

CA on methylation
methFisherTest

Fisher exact Test on methylation Data
coversionGenom

Sequence conversion
plotMatrixSNP

Plot of methylation states dependencies
MethLollipops

"Lollipops" Methylation plot
makeDataMethGFF

GFF methylation files
heatMapMeth

HeatMap diagram over methylation data
makeLocalExpDir

Saving example data
plotAbsMethyl

Plot number mathylation on CpGs positions