methVisual (version 1.24.0)

findNonAligned: Aligned CpG positions

Description

Determination of non-aligned CpG positions

Usage

findNonAligned(methData)

Arguments

methData

List; contains information on the pairwise alignments, and methylated CpG motifs

Value

Integer matrix, where columns=CpG positions, row=clone sequences. 0 = not methylated, 1 = methylated, 2 = not aligned

Details

Determination of aligned and not-aligned positions of CpGs of examined sequences in relation to genomic sequence.

Examples

data(methData)
findNonAligned(methData)