methVisual (version 1.24.0)

plotAbsMethyl: Plot number mathylation on CpGs positions

Description

Plot of absolute/relative number of mathylation on aligned CpGs positions

Usage

plotAbsMethyl(methData,real)

Arguments

methData

List; contains information on the pairwise alignments, and methylated CpG motifs.

real

real position (real=TRUE) or relative position (real=FLASE) on reference sequence

Value

A vector with the absolute/relative number of methylation on genomic sequence CpG positions over all examined sequences

Details

This function generates a plot of the absolute number of methylation in all CpG sites over all examined sequences. It returns a vector with the absolute number of methylation sites of all examined clone sequences. The user supplies a list object containing information about the pairwise alignments, and methylated CpG sites as calculated by MethAlignNW() or makeDataMethGFF(). The user can display the absolute number of methylation over the CpG sites according to their relative position on the reference sequence.

Examples

## using methData
data(methData)
plotAbsMethyl(methData,real=FALSE)