methVisual (version 1.24.0)

selectRefSeq: Uploading genomic sequence

Description

Uploading genomic sequence

Usage

selectRefSeq(sFileName)

Arguments

sFileName

path and name of genomic sequence to be uploaded

Value

This function is used in order to read the reference sequence into the R environment. The reference sequences must be in fasta format. The user must give the path and name of the reference sequence in a character string.

Details

Uploading genomic sequence

Examples

## make sure that you have reading 
## permission under R.home() directory. If you do not have permission
## choose your own path.
#dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) 
BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer")
dir.create(BiqAnalyzer_path) 
makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path)
refseq <- selectRefSeq(file.path(BiqAnalyzer_path, "Master_Sequence.txt"))