Extract genomic ranges for a given bin
Class "BSdataSet"
Class "BSdata"
Class "GElist"
Exploratory statistics of samples in BSdataSet object
Partitioning genome in chunks, for parallel computation
Analysis of base-pair resolution DNA methylation data.
Convert the list returned by the function scanTabix into a GRanges
Identifying Partially Methylated Domains (PMDs)
Get genomic Cxx positons for a series of genomic regions
Identifying Differentially Methylated Regions (DMRs)
Profile DNA methylation data for a set of genomic regions
Fisher's method implementation
Function to pool reads of replicates
Retrieve mC calls for a GRanges set of genomic regions given a BSdata object for a sample
Determines the density of genomic Cxx positions for a series of
genomic regions
Consolidating Differentially Methylated Regions (DMRs)
Smoothing and plotting methylation data
Processing hmC information from the MLML output
Preparing tabular data to be used to feed a BSdata object
Plot DNA methylation together with other omics, or annotation data for a genomic region
Function to read methylation calls
Class "GEcollection"