mglR (version 0.1.0)

makeGoSearch: Returns gene names with a given GO term

Description

makeGoSearch returns a character vector of gene names.

Usage

makeGoSearch(mgl, term = c(""), go, saveFile = TRUE)

Arguments

mgl

List; see buildFromNames, buildFromRegion, or buildFromEnsgs

term

Character vector representing GO term of interest

go

List produced by makeGo

saveFile

A logical flag indicating whether a csv file ('GoSearch_[term].csv') should be saved in the current directory

Details

Of interest maybe groups of genes that have the same GO term.

See Also

makeGo

Other output: makeAeiPlot, makeCoXpGene, makeCoXpTranscript, makeDnaseSig, makeGo, makeMultiEqtl, makeOverlapTable, makeOverlap, makePhenotypeSearch, makePhenotypes, makeSnpSearch, makeSnps, makeSummary

Examples

exMgl() -> myMgl
makeGo(myMgl, saveFile = TRUE) -> myGo
makeGoSearch(myMgl, term = 'small molecule metabolic process', 
    go = myGo, saveFile = TRUE) -> myGoSearch