mglR (version 0.1.0)

makePhenotypeSearch: Returns gene names with a given phenotype

Description

makePhenotypeSearch returns a character vector of gene names.

Usage

makePhenotypeSearch(mgl, term = c(""), phen, saveFile = FALSE)

Arguments

mgl

List; see buildFromNames, buildFromRegion, or buildFromEnsgs

term

Character vector representing phenotype of interest

phen

List produced by makePhenotypes

saveFile

A logical flag indicating whether a csv file ('PhenotypeSearch_[term].csv') should be saved in the current directory

Details

Of interest maybe groups of genes that have the same phenotype

See Also

makePhenotypes

Other output: makeAeiPlot, makeCoXpGene, makeCoXpTranscript, makeDnaseSig, makeGoSearch, makeGo, makeMultiEqtl, makeOverlapTable, makeOverlap, makePhenotypes, makeSnpSearch, makeSnps, makeSummary

Examples

exMgl() -> myMgl
makePhenotypes(myMgl, saveFile = FALSE) -> myPhenotypes
makePhenotypeSearch(myMgl, term = 'Mean corpuscular hemoglobin', 
    phen = myPhenotypes, saveFile = FALSE) -> myPhenotypeSearch