mglR (version 0.1.0)

makeSnpSearch: Returns gene names with a given SNP

Description

makePhenotypeSearch returns a character vector of gene names.

Usage

makeSnpSearch(mgl, term = c(""), snp, saveFile = FALSE)

Arguments

mgl

List; see buildFromNames, buildFromRegion, or buildFromEnsgs

term

Character vector representing phenotype of interest

snp

List produced by makePhenotypes

saveFile

A logical flag indicating whether a csv file ('SnpSearch_[term].csv') should be saved in the current directory

Details

Of interest maybe groups of genes that have the same associated SNP

See Also

makePhenotypes

Other output: makeAeiPlot, makeCoXpGene, makeCoXpTranscript, makeDnaseSig, makeGoSearch, makeGo, makeMultiEqtl, makeOverlapTable, makeOverlap, makePhenotypeSearch, makePhenotypes, makeSnps, makeSummary

Examples

exMgl() -> myMgl
makeSnps(myMgl, saveFile = FALSE) -> mySnps
makeSnpSearch(myMgl, term = '10_51518910_G_A_b37', snp = mySnps, saveFile = FALSE) -> mySnpSearch