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miLineage (version 2.1)

Association Tests for Microbial Lineages on a Taxonomic Tree

Description

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

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Version

Install

install.packages('miLineage')

Monthly Downloads

242

Version

2.1

License

GPL (>= 2)

Maintainer

Zheng-Zheng Tang

Last Published

March 23rd, 2018

Functions in miLineage (2.1)

ZIGDM

Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) Tests
data.real

Real data that include an OTU table, a taxonomy table, and a covariate table
QCAT

Quasi-Conditional Association Test (QCAT)
data.toy

Simulated data that include an OTU table, a taxonomy table, and a covariate table
QCAT_GEE

QCAT+GEE Two-Part Test
miLineage-package

Association Tests for Microbial Lineages on a Taxonomic Tree