data.toy

This data is simulated based on a mock taxonomic tree. The data contain an OTU table, a taxonomy table, and a covariate. The data include 50 samples (25 case-control pairs) and 7 OTUs.

datasets

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

Zheng-Zheng Tang

miLineage

Association Tests for Microbial Lineages on a Taxonomic Tree

data.toy function

data.toy contains the following objects:<ul>
<li>OTU.toy: a matrix of OTU counts for 50 samples and 7 OTUs</li>
<li>Tax.toy: a matrix of taxonomy table with 3 ranks</li>
<li>covariate.toy: a matrix of one variable</li>
</ul>

data.toy: Simulated data that include an OTU table, a taxonomy table, and a covariate table

Description

Usage

Arguments

Format

Examples