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mixKernel (version 0.9-2)

Omics Data Integration Using Kernel Methods

Description

Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view . A method to select (as well as funtions to display) important variables is also provided .

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Version

Install

install.packages('mixKernel')

Monthly Downloads

259

Version

0.9-2

License

GPL (>= 2)

Maintainer

Nathalie Vialaneix

Last Published

April 19th, 2025

Functions in mixKernel (0.9-2)

kernel.pca.permute

Assess variable importance
compute.kernel

Compute a kernel
cim.kernel

Compute and display similarities between multiple kernels
plotVar.kernel.pca

Plot importance of variables in kernel PCA
kernel.pca

Kernel Principal Components Analysis
mixKernel.users.guide

View mixKernel User's Guide
select.features

Select important features
center.scale

Center and scale
combine.kernels

Combine multiple kernels into a meta-kernel
TARAoceans

TARA ocean microbiome data