mmod (version 0.2.1)

diff_stats: Calculate differentiation statistics for a genind objects

Description

This function calculates three different statistics of differentiation for a genetic dataset. Nei's Gst, Hedrick's G'st and Jost's D

Usage

diff_stats(x)

Arguments

x

genind object (from package adegenet)

Details

See individual functions D_Jost(), Gst_Hedrick() and Gst_Nei() for more details

References

Hedrick, PW. (2005), A Standardized Genetic Differentiation Measure. Evolution 59: 1633-1638.

Jost, L. (2008), GST and its relatives do not measure differentiation. Molecular Ecology, 17: 4015-4026.

Meirmans PG, Hedrick PW (2011), Assessing population structure: FST and related measures. Molecular Ecology Resources, 11:5-18

Nei M. (1973) Analysis of gene diversity in subdivided populations. PNAS: 3321-3323.

Nei M, Chesser RK. (1983). Estimation of fixation indices and gene diversities. Annals of Human Genetics. 47: 253-259.

See Also

Other diffstat: D_Jost, Gst_Hedrick, Gst_Nei

Examples

data(nancycats)
diff_stats(nancycats)