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mmod (version 0.2.1)

Modern measures of population differentiation

Description

mmod provides functions for measuring population divergence from genotypic data

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Install

install.packages('mmod')

Monthly Downloads

1,494

Version

0.2.1

License

MIT

Issues

8

Pull Requests

0

Stars

13

Forks

4

Maintainer

David Winter

Last Published

February 3rd, 2012

Functions in mmod (0.2.1)

pairwise_Gst_Hedrick

Calculates pairwise values of Hedrick's G'st
jacknife_populations

Calculate differentiation stats for a jacknife sample of a Genind opject
Gst_Nei

Calculate Nei's Gst using estimators for Hs and Ht
mmod

Modern Measures of Divergence
diff_stats

Calculate differentiation statistics for a genind objects
pairwise_Gst_Nei

Calculates pairwise values of Nei's Gst
summarise_bootsrap

Apply a differentiation statistic to a bootstrap sample
diff_test

An exact test of population differentiation for Genind objects
Gst_Hedrick

Calculate Nei's Gst using estimators for Hs and Ht
pairwise_D

Calculates pairwise values of Jost's D
chao_bootstrap

Produce bootstrap samples from each subpopulation of a genind object
rgenotypes

Randomly create genotypes
harmonic_mean

Harmonic mean
D_Jost

Calculate Jost's D