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mmod (version 1.01)

Modern measures of population differentiation

Description

mmod provides functions for measuring population divergence from genotypic data

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Install

install.packages('mmod')

Monthly Downloads

1,494

Version

1.01

License

MIT

Issues

8

Pull Requests

0

Stars

13

Forks

4

Maintainer

David Winter

Last Published

October 18th, 2012

Functions in mmod (1.01)

dist.codom

Calculate distance between individual for co-dominant locus
diff_stats

Calculate differentiation statistics for a genind object
Gst_Hedrick

Calculate Nei's Gst using estimators for Hs and Ht
harmonic_mean

Harmonic mean
mmod

Modern Measures of Differentiation
pairwise_D

Calculates pairwise values of Jost's D
diff_test

An exact test of population differentiation for genind objects
jacknife_populations

Create jacknife samples of a genind object by population
D_Jost

Calculate Jost's D
Gst_Nei

Calculate Nei's Gst using estimators for Hs and Ht
Phi_st_Meirmans

Calculate Phi_st from a genind object
pairwise_Gst_Nei

Calculates pairwise values of Nei's Gst
summarise_bootstrap

Apply a differentiation statistic to a bootstrap sample
chao_bootstrap

Produce bootstrap samples from each subpopulation of a genind object
rgenotypes

Randomly create genotypes
pairwise_Gst_Hedrick

Calculates pairwise values of Hedrick's G'st