mmod (version 1.01)

Phi_st_Meirmans: Calculate Phi_st from a genind object

Description

This function calculates Meirmans' corrected version of Phi_st, an Fst analog produced using the AMOVA framework. Note, the global estimate produced by this function is calculated as the mean distance between individuals across all loci, and this exlcuded individuals with one or more missing value.

Usage

Phi_st_Meirmans(x)

Arguments

x

genind object (from package adegenet)

Value

• per.locus Phi_st estimate for each locus

  global Phi_st estimate across all loci

References

Meirmans, PW. (2005), Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution 60: 2399-402.

Excoffier, L., Smouse, P., Quattro, J. (1992), Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-91

See Also

Other diffstat: D_Jost, Gst_Hedrick, Gst_Nei, diff_stats

Examples

data(nancycats)
Phi_st_Meirmans(nancycats[1:26,])