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mrMLM.GUI (version 4.0.2)

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface

Description

Conduct multi-locus genome-wide association study under the framework of multi-locus random-SNP-effect mixed linear model (mrMLM). First, each marker on the genome is scanned. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers that are potentially associated with the trait are included in a multi-locus genetic model, their effects are estimated by empirical Bayes and all the nonzero effects were further identified by likelihood ratio test for true QTL. Wen YJ, Zhang H, Ni YL, Huang B, Zhang J, Feng JY, Wang SB, Dunwell JM, Zhang YM, Wu R (2018) .

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Version

Install

install.packages('mrMLM.GUI')

Monthly Downloads

375

Version

4.0.2

License

GPL (>= 2)

Maintainer

Yuanming Zhang

Last Published

October 8th, 2020

Functions in mrMLM.GUI (4.0.2)

mrgenraw

raw genotype data
mrMLM.GUI-package

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface
ISIS

To perform GWAS with ISIS EM-BLASSO method
fmegen

Genotype data
FASTmrEMMA

To perform GWAS with FASTmrEMMA method
mrphe

phenotype data
FASTmrMLM

To perform GWAS with FASTmrMLM method
mrMLMFun

To perform GWAS with mrMLM method
fmegenraw

raw genotype data
mrgen

Genotype data
multiplication_speed

Matrix multiplication acceleration algorithm.
pLARmEB

To perform GWAS with pLARmEB method
pKWmEB

To perform GWAS with pKWmEB method