mrMLM.GUI (version 4.0.2)

FASTmrEMMA: To perform GWAS with FASTmrEMMA method

Description

FAST multi-locus random-SNP-effect EMMA

Usage

FASTmrEMMA(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svmlod,Genformat,Likelihood,CLO)

Arguments

gen

genotype matrix.

phe

phenotype matrix.

outATCG

genotype for code 1.

genRaw

raw genotype.

kk

kinship matrix.

psmatrix

population structure matrix.

svpal

Critical P-value for selecting variable.

svmlod

Critical LOD score for significant QTN.

Genformat

Format for genotypic codes.

Likelihood

restricted maximum likelihood (REML) and maximum likelihood (ML).

CLO

number of CPU.

Examples

# NOT RUN {
G1=data(fmegen)
P1=data(mrphe)
G2=data(fmegenraw)
result=FASTmrEMMA(fmegen,mrphe,outATCG=NULL,fmegenraw,kk=NULL,
psmatrix=NULL,0.005,3,1,Likelihood="REML",CLO=1)
# }