multiDEGGs (version 1.1.2)

View_diffNetworks: Interactive visualisation of differential networks

Description

Explore differential networks and interactively select regression and box plots

Usage

View_diffNetworks(deggs_object, legend.arrow.width = 0.35, stepY_legend = 55)

Value

a shiny interface showing networks with selectable nodes and links

Arguments

deggs_object

an object of class deggs generated by get_diffNetworks

legend.arrow.width

width of the arrow used in the network legend. Default is 0.35. As the number of assayData matrices increases this parameter must be accordingly increased to avoid graphical errors in the legend.

stepY_legend

vertical space between legend arrows. It is used together with legend.arrow.width to adjust the legend space in case of graphical errors. Default is 55.

Examples

data("synthetic_metadata")
data("synthetic_rnaseqData")
data("synthetic_proteomicData")
data("synthetic_OlinkData")
assayData_list <- list("RNAseq" = synthetic_rnaseqData,
                       "Proteomics" = synthetic_proteomicData,
                       "Olink" = synthetic_OlinkData)
deggs_object <- get_diffNetworks(assayData = assayData_list,
                                 metadata = synthetic_metadata,
                                 category_variable = "response",
                                 regression_method = "lm",
                                 verbose = FALSE,
                                 show_progressBar = FALSE,
                                 cores = 1)
# the below function runs a shiny app, so can't be run during R CMD check                                  
if(interactive()){
View_diffNetworks(deggs_object)  
}