multiDEGGs (version 1.1.2)

get_multiOmics_diffNetworks: Get a table of all significant interactions across categories

Description

Get a table of all significant interactions across categories

Usage

get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)

Value

a list of multilayer networks (as edge tables), one per category.

Arguments

deggs_object

an object of class deggs generated by get_diffNetworks

sig_threshold

threshold for significance. Default 0.05.

Examples

data("synthetic_metadata")
data("synthetic_rnaseqData")
data("synthetic_proteomicData")
data("synthetic_OlinkData")
assayData_list <- list("RNAseq" = synthetic_rnaseqData,
                       "Proteomics" = synthetic_proteomicData,
                       "Olink" = synthetic_OlinkData)
deggs_object <- get_diffNetworks(assayData = assayData_list,
                                 metadata = synthetic_metadata,
                                 category_variable = "response",
                                 verbose = FALSE,
                                 show_progressBar = FALSE,
                                 cores = 2)
get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)