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mutoss (version 0.1-4)
Unified multiple testing procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,555
Version
0.1-4
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
October 4th, 2010
Functions in mutoss (0.1-4)
Search functions
BL
Benjamini-Liu (1999) step-down procedure
gatherParameters
Extracts the parameters from the MutossSim objects in listOfObjects and...
mu.test.name
Tests if all hypotheses have the same names.
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
mu.test.class
Test for compatible classes for comparison...
reject
reject
bonferroni
Bonferroni correction...
SidakSD
Sidak-like (1987) step-down procedure
augmentation
Wrapper function to the augmentation methods of the multtest package.
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
Qvalue
Storey's (2001) q-value Procedure...
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
mu.test.same.data
Tests if the same pvalues were used by different procedures.
BH
Benjamini-Hochberg (1995) linear step-up procedure
sidak
Sidak correction
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
mu.test.rates
Tests that different procedures used the same error rates.
adjPValuesPlot
A function plotting adjusted p-values...
mu.test.type
Tests that different procedures use the same error types.
MutossMethod-class
Class MutossMethod
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
nparcomp
Simultaneous confidence intervals for relative contrast effects...
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
hommel
Hommel's (1988) step-up-procedure
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
hochberg
Hochberg (1988) step-up procedure
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
SD
A general step-down procedure.
ranktruncated
Rank truncated p-Value procedure...
ftest.marginal
Marginal F test
mutoss.apply
Applies a function to a Mutoss object.
mutoss.plotCI
mutoss.plotCI
Mutoss-class
Class Mutoss
twosamp.marginal
Marginal two sample test
onesamp.marginal
Marginal one sample test
snk
Student - Newman - Keuls rejective test procedure.
holm
Holm's (1979) step-down-procedure
linearStepUp
Linear Step Up Service Function...
SUD
A general step-up-down procedure.
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
simulation
Simulation studies
multiple.down.adjust
A service function used by multiple...
gatherStatistics
Gathering statistics from MutossSim objects
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
BY
Benjamini-Yekutieli (2001) step-up procedure
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
paired.marginal
Marginal paired two sample test
notterman
Notterman data set
two.stage
A p-value procedure which controls the FDR for independent test statistics.
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
ErrorControl-class
Class ErrorControl
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
mutoss.models
Mutoss Models
requireLibrary
Tries to load a package.
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
MutossSim-class
Class MutossSim
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
pValuesPlot
A function plotting p-values...
pval2qval
Strimmer et al.'s fdrtool-based q-values
rom
Rom's (1990) step-up-procedure.
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
SU
A general step-up procedure.
compareMutoss
Functions for comparing outputs of different procedures.
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
printRejected
Internal MuTossProjekt-Function