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mutoss (version 0.1-9)
Unified Multiple Testing Procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,471
Version
0.1-9
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
March 12th, 2015
Functions in mutoss (0.1-9)
Search functions
ErrorControl-class
Class ErrorControl
Qvalue
Storey's (2001) q-value Procedure...
Mutoss-class
Class Mutoss
linearStepUp
Linear Step Up Service Function...
mu.test.name
Tests if all hypotheses have the same names.
sidak
Sidak correction
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
MutossMethod-class
Class MutossMethod
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
SidakSD
Sidak-like (1987) step-down procedure
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
BH
Benjamini-Hochberg (1995) linear step-up procedure
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
onesamp.marginal
Marginal one sample test
BY
Benjamini-Yekutieli (2001) step-up procedure
pval2qval
Strimmer et al.'s fdrtool-based q-values
ftest.marginal
Marginal F test
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
notterman
Notterman data set
SD
A general step-down procedure.
compareMutoss
Functions for comparing outputs of different procedures.
twosamp.marginal
Marginal two sample test
multiple.down.adjust
A service function used by multiple...
nparcomp
Simultaneous confidence intervals for relative contrast effects...
mu.test.type
Tests that different procedures use the same error types.
mu.test.rates
Tests that different procedures used the same error rates.
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
hommel
Hommel's (1988) step-up-procedure
mutoss.apply
Applies a function to a Mutoss object.
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
hochberg
Hochberg (1988) step-up procedure
mutoss.plotCI
mutoss.plotCI
bonferroni
Bonferroni correction...
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
two.stage
A p-value procedure which controls the FDR for independent test statistics.
simulation
Simulation studies
SU
A general step-up procedure.
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
pValuesPlot
A function plotting p-values...
SUD
A general step-up-down procedure.
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
holm
Holm's (1979) step-down-procedure
mu.test.same.data
Tests if the same pvalues were used by different procedures.
adjPValuesPlot
A function plotting adjusted p-values...
ranktruncated
Rank truncated p-Value procedure...
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
reject
reject
paired.marginal
Marginal paired two sample test
gatherParameters
Extracts the parameters from the simulation()-Object
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
rom
Rom's (1990) step-up-procedure.
augmentation
Wrapper function to the augmentation methods of the multtest package.
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
printRejected
Internal MuTossProjekt-Function
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
gatherStatistics
Gathering statistics from simulation()-Object
snk
Student - Newman - Keuls rejective test procedure.
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
mu.test.class
Test for compatible classes for comparison...
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
requireLibrary
Tries to load a package.
BL
Benjamini-Liu (1999) step-down procedure
mutoss.models
Mutoss Models