add_summary_function

Sometimes other ways of calculating summary functions is wanted and is done in other packages,
in this instance the data can be loaded into the <code>mxFDA</code> object.

Methods and tools for deriving spatial summary functions from single-cell imaging
data and performing functional data analyses. Functions can be applied to other single-cell
technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods
are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the
spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.

Alex Soupir

mxfda

A Functional Data Analysis Package for Spatial Single Cell Data

Julia Wrobel

add_summary_function function

<dl><dt>mxFDAobject</dt>
<dd>object of class <code>mxFDA</code></dd>
<dt>summary_function_data</dt>
<dd>data frame with <code>summary_key</code> from <code>mxFDA</code> object as key column for summary function</dd>
<dt>metric</dt>
<dd>character vector with either 'uni' or 'bi' and 'k', 'l', or 'g'; e.g. 'uni g'</dd></dl>

Arguments

Alex Soupir <a href="/link/alex.soupir%40moffitt.org?package=mxfda&version=0.2.2-1" data-mini-rdoc="mxfda::alex.soupir@moffitt.org">alex.soupir@moffitt.org</a>

Author

Add Summary Function — add_summary_function

<dl>

<dt>mxFDAobject</dt>
<dd>object of class <code>mxFDA</code></dd>


<dt>summary_function_data</dt>
<dd>data frame with <code>summary_key</code> from <code>mxFDA</code> object as key column for summary function</dd>


<dt>metric</dt>
<dd>character vector with either 'uni' or 'bi' and 'k', 'l', or 'g'; e.g. 'uni g'</dd>

</dl>

Alex Soupir <a href='mailto:alex.soupir@moffitt.org'>alex.soupir@moffitt.org</a>

add_summary_function: Add Summary Function

Description

Usage

Value

Arguments

Author