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mxfda

mxFDA

A functional data analysis package for spatial point pattern data.

Installing mxFDA to R

To install, the devtools or remotes package is required for the install_github() function:

#install devtools if not available
if (!require("devtools", quietly = TRUE))
  install.packages("devtools")

#install from github
devtools::install_github("julia-wrobel/mxfda")

To install a specific release of mxfda, use the devtools syntax. This is an example for installing the first release of mxfda:

devtools::install_github('julia-wrobel/mxfda@v0.2.2.1')

Vignettes and Function References

If interested in documentation and how-to's, please see http://juliawrobel.com/mxfda/

GitHub Code

The raw code can be found on the GitHub page by clicking the GitHub symbol in the upper right of the pkgdown site or at https://github.com/julia-wrobel/mxfda

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Version

Install

install.packages('mxfda')

Monthly Downloads

264

Version

0.2.2-1

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Alex Soupir

Last Published

February 19th, 2025

Functions in mxfda (0.2.2-1)

extract_surface

Extract Surface
extract_fpca_scores

Extract FPCA scores
filter_spatial

Filter Spatial data
is.empty

Is Empty
metric.exists

Check if Spatial Summary Exists
make_mxfda

Make mxFDA class object
lung_df

Multiplex imaging data from a non-small cell lung cancer study.
one_zero

1/0 Checker
ovarian_FDA

Multiplex imaging data from an ovarian cancer tumor microarray
extract_spatial_summary

Summarise spatial data in mxFDA object
extract_model

Extract Model
get_data

Get Data
impute_fpca

impute_fpca
run_fpca

run_fpca
run_fcm

Run Function Cox Models
plot_mfpc

Create plot of mean +/- scaled eigenfunctions from FPCA
process_fcm

process_fcm
run_sofr

Run Scalar on Function Regression
run_mfpca

run_fpca
plot_fpc

Create plot of mean +/- scaled eigenfunctions from FPCA
run_mfcm

Run function Cox models for data with multiple samples per subject
plot.sofr

Plot sofr object
spatialTIME_summary_functions

spatialTIME summary function extraction
mxfda-package

mxfda: A Functional Data Analysis Package for Spatial Single Cell Data
plot.mxFDA

Plot mxFDA object
plot.lfcmSurface

Plot lfcm surface
univariate

univariate
plot.afcmSurface

Plot afcm object
summary.mxFDA

Summary method for object of class mxFDA
lung_FDA

Multiplex imaging data from a non-small cell lung cancer study
%>%

Pipe operator
bivariate

bivariate
entropy

Entropy
Kcross

Kcross
add_summary_function

Add Summary Function
extract_entropy

extract_entropy
extract_summary_functions

Extract Summary Functions
extract_fpca_object

Extract FPCA object
Kest

Kest
filter_data

Filter Data
can_permute

Can Permute Checker
Gcross

Gcross
Lcross

Lcross
extract_c

extract_c
Lest

Lest
Gest

Gest