entropy

Methods and tools for deriving spatial summary functions from single-cell imaging
data and performing functional data analyses. Functions can be applied to other single-cell
technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods
are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the
spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.

Alex Soupir

mxfda

A Functional Data Analysis Package for Spatial Single Cell Data

Julia Wrobel

entropy function

<dl><dt>df</dt>
<dd>data frame with x and y columns, along with a column for point marks</dd>
<dt>r_vec</dt>
<dd>vector of length wanted for breaks (will be rescaled) with max value at max for measuring entropy</dd>
<dt>markvar</dt>
<dd>The name of the variable that denotes cell type(s) of interest. Character.</dd></dl>

Arguments

Thao Vu <a href="/link/thao.3.vu%40cuanschutz.edu?package=mxfda&version=0.2.2-1" data-mini-rdoc="mxfda::thao.3.vu@cuanschutz.edu">thao.3.vu@cuanschutz.edu</a>
Alex Soupir <a href="/link/alex.soupir%40moffitt.org?package=mxfda&version=0.2.2-1" data-mini-rdoc="mxfda::alex.soupir@moffitt.org">alex.soupir@moffitt.org</a>

Author

Entropy — entropy

<dl>

<dt>df</dt>
<dd>data frame with x and y columns, along with a column for point marks</dd>


<dt>r_vec</dt>
<dd>vector of length wanted for breaks (will be rescaled) with max value at max for measuring entropy</dd>


<dt>markvar</dt>
<dd>The name of the variable that denotes cell type(s) of interest. Character.</dd>

</dl>

Thao Vu <a href='mailto:thao.3.vu@cuanschutz.edu'>thao.3.vu@cuanschutz.edu</a>
Alex Soupir <a href='mailto:alex.soupir@moffitt.org'>alex.soupir@moffitt.org</a>

entropy: Entropy

Description

Usage

Value

Arguments

Author

Details

References