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mzID (version 1.10.2)

An mzIdentML parser for R

Description

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

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Version

Version

1.10.2

License

GPL (>= 2)

Maintainer

Thomas Pedersen

Last Published

February 15th, 2017

Functions in mzID (1.10.2)

mzIDevidence-class

A class to store peptide evidence information from an mzIdentML file
mzID

Parse an mzIdentML file
mzIDpeptides-class

A class to store peptide information from an mzIdentML file
mzIDCollection

Create a new mzIDCollection
mzID-class

A class to contain data from mzIdentML-files
mzIDdatabase-class

A class to store database information from an mzIdentML file
mzIDparameters-class

A Class to store analysis information from the mzIdentML file
removeDecoy

Remove decoy identification
mzID-getters

Getter functions for identification data
flatten

Flatten an mzID related class into a table
mzID-package

A parser for the mzIdentML file format
mzIDpeptides

A constructor for the mzIDpeptides class
mzIDpsm-class

A class to store psm information from an mzIdentML file
mzIDCollection-class

A class to handle a set of mzID objects
mzIDparameters

A constructor for the mzIDparameters class
mzIDdatabase

A constructor for the mzIDdatabase class
mzIDevidence

A constructor for the mzIDevidence class
mzIDpsm

A constructor for the mzIDpsm class
increment

Tools to handle generation of lookup names for the dictionary
keyFor

Tools to handle generation of lookup names for the dictionary