## S3 method for class 'mzID':
show(object)## S3 method for class 'mzID':
length(x)
## S3 method for class 'mzID':
removeDecoy(object)
## S3 method for class 'mzID':
database(object, safeNames = TRUE)
## S3 method for class 'mzID':
evidence(object, safeNames = TRUE)
## S3 method for class 'mzID':
parameters(object)
## S3 method for class 'mzID':
software(object)
## S3 method for class 'mzID':
files(object)
## S3 method for class 'mzID':
peptides(object, safeNames = TRUE)
## S3 method for class 'mzID':
modifications(object)
## S3 method for class 'mzID':
id(object, safeNames = TRUE)
## S3 method for class 'mzID':
scans(object, safeNames = TRUE)
## S3 method for class 'mzID':
idScanMap(object)
## S3 method for class 'mzID':
c(x, y, ..., recursive = FALSE)
show
: Short summary of object contentlength
: Get number of psm' in objectremoveDecoy
: Remove decoys from mzID objectdatabase
: Get the database used for searchingevidence
: Get the evidence from the peptide searchparameters
: Get the parameters used for the searchsoftware
: Get the software used to arrive at the resultsfiles
: Get the data files used for the analysispeptides
: Get the peptides identified.modifications
: Get the modification on the identified peptidesid
: Get the identification resultsscans
: Get the scans matched to peptidesidScanMap
: Get the link between scans and identificationsc
: Combine mzID and mzIDCollection objectsmzID
constructor, which
handles parsing of mzIdentML filesmzID
Other mzID.classes: mzIDCollection-class
,
mzIDdatabase-class
,
mzIDevidence-class
,
mzIDparameters-class
,
mzIDpeptides-class
,
mzIDpsm-class