Collect the normalized branching times from the stem age
Get the average nLTT from a collection of phylogenies
nltt_diff_exact_norm_brts
Calculates the exact difference between the nLTT
curves of the branching times
Calculates the exact difference between the nLTT
curves of the branching times
Calculates the exact difference between the nLTT
curves of the event times. This includes extinction events.
nltt_diff_exact_calc_extinct
Calculates the exact difference between the nLTT
curves of the event times. This includes extinction events.
Calculates the exact, difference between the lineage through time
curves of tree1 & tree2 (normalized in time and for the number of lineages)
Stretch matrix 'm' with a timestep resolution of 'dt'.
get_phylogeny_nltt_matrix
Extract the nLTT matrix from a phylogeny
Calculates the nLTT statistic between each phylogeny in
a collection compared to a same focal/reference tree
Normalized version of the ape function ltt.plot
Normalized version of the ape function ltt.lines.
Collect the number of lineages from the stem age
Get the average nLTT from a collection of phylogenies
Check if the step type is valid
A function to perform Approximate Bayesian Computation within a
Sequential Markov Chain (ABC-SMC), for diversification analysis
of phylogenetic trees.
This function does nothing. It is intended to inherit is parameters'
documentation.
Collect the branching times from the stem age
Check if the time unit is valid
Check if the input is a valid collection of one or more phylogenies
example trees to test the functionality of the package
Checks that event times are correct
function, using a Monte Carlo Markov Chain
Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves
Calculates the exact difference between the lineage through time curves of
tree1 & tree2 (normalized in time and for the number of lineages)
Get the nLTT values in time
Collect the normalized number of lineages from the stem age
Internal nLTT functions
Calculate the difference between two normalized
Lineage-Through-Time curves, given two phylogenetic trees.
Calculate the exact difference between
two normalized Lineage-Through-Time curves, given two phylogenetic trees.