default_params_doc

This function does nothing. It is intended to inherit is parameters'
documentation.

Provides functions to calculate the normalised Lineage-Through-
Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures
the difference between two Lineage-Through-Time curves, where each curve is
normalised both in time and in number of lineages.

Thijs Janzen

nLTT

Calculate the NLTT Statistic

Richèl J.C. Bilderbeek

Pedro Neves

default_params_doc function

<dl><dt>dt</dt>
<dd>The timestep resolution,
a value bigger than zero and less or equal to one.
1/dt is the number of points that will be evaluated</dd>
<dt>phylogenies</dt>
<dd>a collection of one or more phylogenies,
where the phylogenies are of type phylo.
This collection can both be a list of phylo or
a multiphylo.</dd>
<dt>step_type</dt>
<dd>when between two points, where the second point
 has both a higher x and y coordinat, which y coordinat to follow.
'step_type' can be:<ul>
<li>lower maintain the y-coordinat of the leftmost point</li>
<li>upper already use the y-coordinat of the rightmost point</li>
</ul></dd>
<dt>time_unit</dt>
<dd>the time unit of the branching times<ul>
<li>"ago: "the branching times are postive,
 as these are in time units ago</li>
<li>"since: "the branching times are negative,
 as these are in time units since present</li>
</ul></dd></dl>

Arguments

Author

This function does nothing. It is intended to inherit is parameters'
documentation. — default_params_doc

<dl>

<dt>dt</dt>
<dd>The timestep resolution,
a value bigger than zero and less or equal to one.
1/dt is the number of points that will be evaluated</dd>


<dt>phylogenies</dt>
<dd>a collection of one or more phylogenies,
where the phylogenies are of type phylo.
This collection can both be a list of phylo or
a multiphylo.</dd>


<dt>step_type</dt>
<dd>when between two points, where the second point
 has both a higher x and y coordinat, which y coordinat to follow.
'step_type' can be:<ul>
<li>lower maintain the y-coordinat of the leftmost point</li>
<li>upper already use the y-coordinat of the rightmost point</li>
</ul></dd>


<dt>time_unit</dt>
<dd>the time unit of the branching times<ul>
<li>"ago: "the branching times are postive,
 as these are in time units ago</li>
<li>"since: "the branching times are negative,
 as these are in time units since present</li>
</ul></dd>

</dl>

default_params_doc: This function does nothing. It is intended to inherit is parameters' documentation.

Description

Usage

Arguments

Author