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netClass (version 1.1)

netClass: An R Package for Network-Based Biomarker Discovery

Description

netClass is an R package for network-based feature (gene) selection for biomarkers discovery via integrating biological information. This package adapts the following 5 algorithms for classifying and predicting gene expression data using prior knowledge: 1) average gene expression of pathway (aep); 2) pathway activities classification (PAC); 3) Hub network Classification (hubc); 4) filter via top ranked genes (FrSVM); 5) smoothed t-statistic (stSVM).

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Install

install.packages('netClass')

Monthly Downloads

40

Version

1.1

License

GPL (>= 2)

Maintainer

Last Published

June 4th, 2013

Functions in netClass (1.1)