netClass: An R Package for Network-Based Biomarker Discovery
Description
netClass is an R package for network-based feature (gene)
selection for biomarkers discovery via integrating biological
information. This package adapts the following 5 algorithms
for classifying and predicting gene expression data using prior
knowledge: 1) average gene expression of pathway (aep); 2)
pathway activities classification (PAC); 3) Hub network
Classification (hubc); 4) filter via top ranked genes (FrSVM);
5) network smoothed t-statistic (stSVM).