netClass (version 1.2.1)

getGeneRanking: Get gene ranking based on geneRank algorithm.

Description

Get the ranking of differential expression of genes on graph using geneRank algorithm.

Usage

getGeneRanking(x = x, y = y, Gsub = Gsub, d = d)

Arguments

x

gene expression data

y

class labels

Gsub

Adjacency matrix of Protein-protein intersction network

d

damping factor for GeneRank, defaults value is 0.5

Value

• r
  ranking of each gebes on graph

See Also

See Also as {pGeneRank}

Examples

library(netClass)
data(expr)
data(ad.matrix)
ex.sum <- expr$genes
y <- expr$y

#r= getGeneRanking(x = ex.sum, y = y, Gsub = ad.matrix, d = 0.5)