Ranking gene based on Googles's PageRank algorithm
Usage
pGeneRANK(W, ex, d, max.degree = Inf)
Arguments
W
adjacency matrix of graph
ex
the fold change/ diffiencicial expression of genes
d
damping factor for GeneRank, defaults value is 0.5
max.degree
Max degree of graph
Value
rranking of each gebes on graph
References
Morrison, Julie L., et al. "GeneRank: using search engine technology for the analysis of microarray experiments." BMC bioinformatics 6.1 (2005): 233.
Page, Lawrence, et al. "The PageRank citation ranking: bringing order to the web." (1999).