netClass (version 1.2.1)

pOfHubs: Computing p value of hubs using the permutation test

Description

Computing p value of hubs using the permutation test

Usage

pOfHubs(x = x, y = y, gHub = gHub, hubs = hubs, nperm = nperm)

Arguments

x

gene expression data

y

a factor of length p comprising the class labels.

gHub

Subgraph of hubs of graph Gs

hubs

Hubs in graph Gs

nperm

number of permutation test steps

Value

• pVal
  Permutation test Pvalues of each hub
• hub
  name of hubs

Examples

# see \code{pOfHubs}