predictPac

train

gene expression data for the testing data

a factor of length p comprising the class labels.

Intersect of genes in network and gene expression profile.

show debugging information in screen or not.

DEBUG

Predicting the test data using pac trained model

netClass is an R package for network-based feature (gene)
selection for biomarkers discovery via integrating biological
information.  This package adapts the following 5 algorithms
for classifying and predicting gene expression data using prior
knowledge: 1) average gene expression of pathway (aep); 2)
pathway activities classification (PAC); 3) Hub network
Classification (hubc); 4) filter via top ranked genes (FrSVM);
5) network smoothed t-statistic (stSVM).

predictPac: Predicting the test data using pac trained model

Description

Usage

Arguments

Value

See Also

Examples