probeset2pathway

common genes between pathway genes and genes in gene expression profile

significant gene expression using SAM methods

sigGens

Generae a mean gene expression of genes of each pathway matrix

netClass is an R package for network-based feature (gene)
selection for biomarkers discovery via integrating biological
information.  This package adapts the following 5 algorithms
for classifying and predicting gene expression data using prior
knowledge: 1) average gene expression of pathway (aep); 2)
pathway activities classification (PAC); 3) Hub network
Classification (hubc); 4) filter via top ranked genes (FrSVM);
5) network smoothed t-statistic (stSVM).

probeset2pathway: Generae a mean gene expression of genes of each pathway matrix

Description

Usage

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See Also