netClass (version 1.2.1)

probeset2pathwayTrain: Search CROG in training data

Description

Search CROG in training data, and using these CORG set to make a matrix for pathways.

Usage

probeset2pathwayTrain(x = x, y = y, int = int)

Arguments

x

gene expression data

y

a factor of length p comprising the class labels.

int

Common genes between gene expression data and interaction network.

Value

• ap
  top ranked pathays
• selectedGenes
  CROG genes
• ....

References

Lee E, Chuang H-Y, Kim J-W, Ideker T, Lee D (2008) Inferring Pathway Activity toward Precise Disease Classification. PLoS Comput Biol 4(11): e1000217. doi:10.1371/journal.pcbi.1000217

See Also

See Also as pac.cv

Examples

#See Also as \name{pac.cv}