netClass (version 1.2.1)

probeset2pathwayTst: Applied CROG to testing data

Description

Applied CORG and pathways activities lists to make a matrix for pathways for test data.

Usage

probeset2pathwayTst(x = x, apTrain = apTrain)

Arguments

x

gene expression data

apTrain

PAC objext which contain CORG and pathways activities lists of training data.

Value

• ap
  top ranked pathays

References

Lee E, Chuang H-Y, Kim J-W, Ideker T, Lee D (2008) Inferring Pathway Activity toward Precise Disease Classification. PLoS Comput Biol 4(11): e1000217. doi:10.1371/journal.pcbi.1000217

See Also

See Also as pac.cv, probeset2pathwayTrain

Examples

#See Also as \code{pac.cv, probeset2pathwayTrain}