netgsa (version 1.0)

netgsa-package: Network-based Gene Set Analysis

Description

The netgsa-package provides functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.

Details

ll{ Package: netgsa Type: Package Version: 1.0 Date: 2014-12-01 License: GPL (>=2) }

References

Ma, J., Shojaie, A. & Michailidis, G. (2014). Network-based pathway enrichment analysis with incomplete network information, submitted. http://arxiv.org/abs/1411.7919.

Shojaie, A., & Michailidis, G. (2010). Network enrichment analysis in complex experiments. Statistical applications in genetics and molecular biology, 9(1), Article 22.

Shojaie, A., & Michailidis, G. (2009). Analysis of gene sets based on the underlying regulatory network. Journal of Computational Biology, 16(3), 407-426.

See Also

glasso, glmnet