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nplplot (version 4.7)

Plotting Linkage and Association Results

Description

Provides routines for plotting linkage and association results along a chromosome, with marker names displayed along the top border. There are also routines for generating BED and BedGraph custom tracks for viewing in the UCSC genome browser. The data reformatting program Mega2 uses this package to plot output from a variety of programs.

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Version

Install

install.packages('nplplot')

Monthly Downloads

216

Version

4.7

License

GPL (>= 3)

Maintainer

Daniel E Weeks

Last Published

December 20th, 2023

Functions in nplplot (4.7)

lods1

LOD score table for chromosome 1
nplplot.old

LOD score plotting (old version of nplplot)
bedplot

Creation of BED and BedGraph custom tracks
nplplot.multi

Plotting linkage or association statistics for multiple results files
prepareplot

Prepare input data files for bedplot and genomeplot
genomeplot

Creation of Genome Graph files
nplplot

Plotting statistics along a chromosome
lods2

LOD score table for chromosome 2
grid-internal

Internal nplplot.multi variables