Generates matched sets of files for linkage or association statistics along a chromosome for viewing in the UCSC genome browser from an input file containing a table of marker names, physical positions and one or more statistical scores.
bedplot(bed.data)TRUE or FALSE depending on whether runs successfully.
File containing a table of marker names, physical position and scores.
bed.data example:
Marker Position TRAIT_ALL
M1 144255 0.670
- 144305 0.640
M3 144355 0.590
- 144378 0.600
M2 144400 0.610
Bedplot creates two types of files: a BED.* file containing a custom
BED annotation track and a BedGraph.* file custom BedGraph annotation
track. These files have the same suffix as the input bed.data file. When
there are multiple scores in bed.data file, a matched pair of
BedGraph track BED track files is created for each score, labelled with
the score names, as well as the chromosome numbers,
e.g. BedGraph.score1.* and BED.score1.*,
BedGraph.score2.* and BED.score2.*, etc.
if (FALSE) bedplot("bed.data.05")
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