occCite v0.4.5
0
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Querying and Managing Large Biodiversity Occurrence Datasets
Facilitates the gathering of biodiversity occurrence data
from disparate sources. Metadata is managed throughout the process to facilitate
reporting and enhanced ability to repeat analyses.
Functions in occCite
| Name | Description | |
| occCitation | Occurrence Citations | |
| getBIENpoints | Download occurrence points from BIEN | |
| myOccCiteObject | Results of an occCite search for *Protea cynaroides* | |
| gbifRetriever | Retrieve downloaded GBIF data sets | |
| occCiteData-class | occCite Data Class | |
| occCiteCitation-class | occCite Citation Class | |
| GBIFLoginManager | GBIF Login Manager | |
| getGBIFpoints | Download occurrence points from GBIF | |
| occCiteMap | Generating a map of downloaded points | |
| occQuery | Query from Taxon List | |
| plot.occCiteData | Plotting summary figures for occCite search results | |
| studyTaxonList | Study Taxon List | |
| summary.occCiteData | Summary for occCite data objects | |
| tabGBIF | GBIF Table | |
| prevGBIFdownload | Download previously-prepared GBIF data sets | |
| print.occCiteCitation | Print occCite citation object | |
| taxonRectification | Taxon Rectification | |
| tabulate.occResults | Tabulate occurrence results | |
| GBIFLogin-class | GBIFLogin Data Class | |
| GBIFtableCleanup | GBIF Table Cleanup | |
| No Results! | ||
Vignettes of occCite
| Name | ||
| occCite_Vignette.Rmd | ||
| No Results! | ||
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Details
| Type | Package |
| License | GPL-3 |
| URL | https://github.com/hannahlowens/occCite |
| BugReports | https://github.com/hannahlowens/occCite/issues |
| Encoding | UTF-8 |
| LazyData | true |
| Language | en-US |
| VignetteBuilder | knitr |
| RoxygenNote | 7.1.1 |
| NeedsCompilation | no |
| Packaged | 2020-11-27 08:42:17 UTC; Hannah |
| Repository | CRAN |
| Date/Publication | 2020-11-28 15:20:06 UTC |
| imports | ape , bib2df , BIEN , bit64 , DBI , dplyr , ggplot2 , htmltools , knitr , leaflet , lubridate , magrittr , methods , rgbif (>= 3.1) , rlang , RPostgreSQL , stats , stringr , taxize , tidyr , waffle |
| depends | R (>= 3.5.0) |
| suggests | RColorBrewer , RefManageR , remotes , rmarkdown , testthat , viridis |
| Contributors | Cory Merow, Vijay Barve, Brian Maitner, Jamie M. Kass, Robert P. Guralnick |
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