occCite v0.4.5

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Querying and Managing Large Biodiversity Occurrence Datasets

Facilitates the gathering of biodiversity occurrence data from disparate sources. Metadata is managed throughout the process to facilitate reporting and enhanced ability to repeat analyses.

Functions in occCite

Name Description
occCitation Occurrence Citations
getBIENpoints Download occurrence points from BIEN
myOccCiteObject Results of an occCite search for *Protea cynaroides*
gbifRetriever Retrieve downloaded GBIF data sets
occCiteData-class occCite Data Class
occCiteCitation-class occCite Citation Class
GBIFLoginManager GBIF Login Manager
getGBIFpoints Download occurrence points from GBIF
occCiteMap Generating a map of downloaded points
occQuery Query from Taxon List
plot.occCiteData Plotting summary figures for occCite search results
studyTaxonList Study Taxon List
summary.occCiteData Summary for occCite data objects
tabGBIF GBIF Table
prevGBIFdownload Download previously-prepared GBIF data sets
print.occCiteCitation Print occCite citation object
taxonRectification Taxon Rectification
tabulate.occResults Tabulate occurrence results
GBIFLogin-class GBIFLogin Data Class
GBIFtableCleanup GBIF Table Cleanup
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Vignettes of occCite

Name
occCite_Vignette.Rmd
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Details

Type Package
License GPL-3
URL https://github.com/hannahlowens/occCite
BugReports https://github.com/hannahlowens/occCite/issues
Encoding UTF-8
LazyData true
Language en-US
VignetteBuilder knitr
RoxygenNote 7.1.1
NeedsCompilation no
Packaged 2020-11-27 08:42:17 UTC; Hannah
Repository CRAN
Date/Publication 2020-11-28 15:20:06 UTC

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