oce v1.2-0


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Analysis of Oceanographic Data

Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively in Dan Kelley's book Oceanographic Analysis with R, published in 2018 by 'Springer-Verlag' with ISBN 978-1-4939-8842-6.



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Oce is an R package for processing oceanographic data. Its webpage provides details, of which this README file is just a sketch.

Stable versions of the package are normally installed from within R, in the same way as other packages. However, this version is only updated a few times a year (pursuant to CRAN policy), so many users install the develop branch instead. This branch may be updated several times per day, as the authors fix bugs or add features that are motivated by day-to-day usage. This is the branch favoured by users who need new features or would like to contribute to Oce development.

The easy way to install the develop branch is to execute the following commands in R.

install_github('dankelley/oce', ref='develop')

and most readers should also install Ocedata, with

install_github('dankelley/ocedata', ref='master')

Oce is emphatically an open-source system, and so the participation of users is very important. This is why Git is used for version control of the Oce source code, and why GitHub is the host for that code. All users are invited to take part in the development process, by suggesting features, by reporting bugs, or just by watching as others do such things. Oceanography is a collaborative discipline, so it makes sense that the evolution of Oce be similarly collaborative.

Functions in oce

Name Description
T90fromT68 Convert from IPTS-68 to ITS-90 temperature
ODF2oce Create ODF object from the output of ODF::read_ODF().
abbreviateTimeLabels Abbreviate a vector of times by removing commonalities
GMTOffsetFromTz Determine time offset from timezone
ODFNames2oceNames Translate from ODF Names to Oce Names
CTD_BCD2014666_008_1_DN.ODF.gz Sample ctd dataset in odf format
T90fromT48 Convert from ITS-48 to ITS-90 temperature
ODFListFromHeader Create a list of ODF header metadata
T68fromT90 Convert from ITS-90 to IPTS-68 temperature
ad2cpHeaderValue Decode an item from a Nortek AD2CP file header
adpEnsembleAverage Ensemble Average an ADP Object in Time
adp_rdi.000 Sample RDI Teledyne adp dataset in format
adp ADP (acoustic-doppler profiler) dataset
adp-class Class to Store adp (ADCP) Data
adv-class Class to Store adv Data
adv ADV (acoustic-doppler velocimeter) dataset
argo ARGO float dataset
argo-class Class to Store Argo Data
airRho Air density
approx3d Trilinear interpolation in a 3D array
amsr-class Class to Store AMSR-2 Satellite Data
as.coastline Coerce Data into a Coastline Object
as.cm Coerce data into a CM object
as.argo Coerce Data Into an Argo Dataset
as.adp Create an ADP Object
as.met Coerce Data into met Object
angleRemap Convert angles from 0:360 to -180:180
argoGrid Grid Argo float data
applyMagneticDeclination Earth magnetic declination
argoNames2oceNames Convert Argo Data Name to Oce Name
as.ctd Coerce data into CTD object
as.rsk Coerce Data Into a Rsk Object
as.echosounder Coerce Data into an Echosounder Object
as.topo Coerce Data into Topo Object
as.unit Convert a String to a Unit
as.gps Coerce data into a GPS dataset
as.windrose Create a Windrose Object
argShow Show an argument to a function, e.g. for debugging
as.xbt Create an xbt object
as.ladp Coerce data into an ladp object
binCount1D Bin-count vector data
bcdToInteger Decode BCD to integer
binAverage Bin-average a vector y, based on x values
as.lisst Coerce Data Into a LISST Object
as.lobo Coerce Data into a Lobo Object
binApply1D Apply a function to vector data
byteToBinary Format bytes as binary defunct
beamToXyzAdp Convert ADP From Beam to XYZ Coordinates
beamToXyz Change ADV or ADP coordinate systems
as.sealevel Coerce Data Into a Sealevel Object
beamToXyzAdpAD2CP Convert AD2CP-style adp data From Beam to XYZ Coordinates
cm A Current Meter (cm) Object
cm-class Class to Store Current Meter Data
cnvName2oceName Infer variable name, units and scale from a Seabird (.cnv) header line
composite Create a composite object by averaging across good data
beamToXyzAdv Convert ADV from Beam to XYZ Coordinates
as.oce Coerce Something Into an Oce Object
as.section Create a Section
concatenate,adp-method Concatenate adp objects
as.tidem Create tidem object from fitted harmonic data
beamUnspreadAdp Adjust ADP Signal for Spherical Spreading
beamName Get names of Acoustic-Doppler Beams
composite,list-method Composite by Averaging Across Data
concatenate,oce-method Concatenate oce objects
concatenate Concatenate oce objects
ctdDecimate Decimate a CTD profile
ctdFindProfiles Find Profiles within a Tow-Yow CTD Record
detrend Detrend a set of observations
download.amsr Download and Cache an amsr File
coriolis Coriolis parameter on rotating earth
decodeHeaderNortek Decode a Nortek Header
ctd-class Class to Store CTD (or general hydrographic) Data
bilinearInterp Bilinear Interpolation Within a Grid
decodeTime Oce Version of as.POSIXct
coastlineCut Cut a Coastline Object at Specified Longitude
coastlineWorld World Coastline
d200321-001.ctd Sample ctd dataset in .ctd format
coastline-class Class to Store Coastline Data
binMean1D Bin-average f=f(x)
binCount2D Bin-count matrix data
drawPalette Draw a palette, leaving margins suitable for accompanying plot
drawIsopycnals Add Isopycnal Curves to TS Plot
concatenate,list-method Concatenate a list of oce objects
binApply2D Apply a function to matrix data
bound125 Calculate a rounded bound, rounded up to mantissa 1, 2, or 5
dataLabel Try to associate data names with units, for use by summary()
equatorialToLocalHorizontal Convert equatorial to local horizontal coordinate
binmapAdp Bin-map an ADP object
binMean2D Bin-average f=f(x,y)
bremen-class Class to Store Bremen-formatted Data
errorbars Draw error bars on an existing xy diagram
composite,amsr-method Create a composite of amsr satellite data
ctimeToSeconds Interpret a character string as a time interval
curl Curl of 2D vector field
enuToOtherAdv Convert ENU to Other Coordinate
colormap Calculate color map
ctd A CTD profile in Halifax Harbour
handleFlags,adp-method Handle Flags in adp Objects
gravity Acceleration due to earth gravity
ctd.cnv Sample ctd dataset in .cnv format
decimate Smooth and Decimate, or Subsample, an Oce Object
defaultFlags Suggest a default flag vector for bad or suspicious data
drawDirectionField Draw a Direction Field
findInOrdered Find indices of times in an ordered vector (defunct)
geodDist Compute Geodesic Distance on Surface of Earth
download.topo Download and Cache a topo File
despike Remove spikes from a time series
coastlineBest Find the Name of the Best Coastline Object
imagep Plot an Image with a Color Palette
firstFinite Get first finite value in a vector or array, or NULL if none
eclipticalToEquatorial Convert ecliptical to equatorial coordinate
handleFlags,vector-method Signal erroneous application to non-oce objects
handleFlags Handle flags in oce objects
download.coastline Download a coastline File
ctdTrim Trim Beginning and Ending of a CTD cast
ctdRaw Seawater CTD Profile, Without Trimming of Extraneous Data
echosounder Echosounder Dataset
initializeFlagScheme,oce-method Establish a data-quality scheme for a oce object
initializeFlagScheme,ctd-method Establish a data-quality scheme for a ctd object
initialize,ctd-method Initialize storage for a ctd object
geodGc Great-circle Segments Between Points on Earth
initializeFlagsInternal Create storage for a flag, and initialize values, for a oce object
d201211_0011.cnv Sample ctd dataset in .cnv format
formatCI Confidence interval in parenthetic notation
echosounder-class Class to Store Echosounder Data
enuToOther Rotate acoustic-Doppler data to a new coordinate system
handleFlags,oce-method Handle flags in oce objects
fullFilename Full name of file, including path
julianCenturyAnomaly Julian-Day number to Julian century
is.ad2cp Test whether object is an AD2CP type
enuToOtherAdp Convert ADP ENU to Rotated Coordinate
lon360 Alter longitudes from -180:180 to 0:360 convention
interpBarnes Grid data using Barnes algorithm
lobo-class Class to Store LOBO Data
handleFlags,section-method Handle flags in Section Objects
integerToAscii Decode integer to corresponding ASCII code
formatPosition Format Geographical Position in Degrees and Minutes
g1sst-class Class to Store G1SST Satellite-model Data
lonFormat Format a longitude
download.met Download and Cache a met File
handleFlags,argo-method Handle Flags in ARGO Objects
landsatTrim Trim a landsat Image to a Geographical Region
map2lonlat Convert X and Y to Longitude and Latitude
latFormat Format a latitude
landsat-class Class to Store landsat Data
initializeFlagScheme,section-method Establish a data-quality scheme for a section object
landsat Sample landsat Dataset
initializeFlagScheme Establish a data-quality scheme for a oce object
landsatAdd Add a Band to a landsat Object
lobo LOBO Dataset
mapContour Add Contours on a Existing map
mapAxis Add Axis Labels to an Existing Map
geodXy Convert From Geographical to Geodesic Coordinates
latlonFormat Format a latitude-longitude pair
geodXyInverse Inverse Geodesic Calculation
gps-class Class to Store GPS Data
handleFlags,ctd-method Handle Flags in CTD Objects
findBottom Find the Ocean Bottom in an Echosounder Object
fillGap Fill a gap in an oce object
handleFlagsInternal Low-level function for handling data-quality flags
lisst LISST Dataset
head.oce Extract The Start of an Oce Object
initializeFlags Create storage for a flag, and initialize values, for a oce object
initializeFlags,oce-method Create storage for a flag, and initialize values, for a oce object
magneticField Earth magnetic declination, inclination, and intensity
mapDirectionField Add a Direction Field to an Existing Map
grad Calculate Matrix Gradient
initializeFlagSchemeInternal Establish a data-quality scheme for a oce object
mapArrows Add Arrows to a Map
lookWithin Look Within the First Element of a List for Replacement Values
mapGrid Add a Longitude and Latitude Grid to a Map
ladp-class Class to Store Lowered-adp Data
lowpass Perform lowpass digital filtering
mapImage Add an Image to a Map
initializeFlags,adp-method Create storage for a flag, and initialize values, for a adp object
mapText Add Text to a Map
mapScalebar Add a Scalebar to a Map
metNames2oceNames Convert met Data Name to Oce Name
moonAngle Lunar Angle as Function of Space and Time
numberAsHMS Convert a Numeric Time to Hour, Minute, and Second
mapPolygon Add a Polygon to a Map
oceCRS Coordinate Reference System strings for some oceans
mapPoints Add Points to a Map
oce.write.table Write the Data Portion of Object to a File
julianDay Convert a POSIXt time to a Julian day
lonlat2map Convert Longitude and Latitude to X and Y
lonlat2utm Convert Longitude and Latitude to UTM
oce-class Base Class for oce Objects
mapTissot Add Tissot Indicatrices to a Map
oce-deprecated Deprecated and Defunct Elements of the oce package
matchBytes Locate byte sequences in a raw vector
lisst-class Class to Store LISST Data
integrateTrapezoid Trapezoidal Integration
mapPlot Draw a Map
oce oce: A Package for Oceanographic Analysis.
makeFilter Make a digital filter
mapCoordinateSystem Draw a coordinate system
oceColorsFreesurface Create colors suitable for freesurface fields
oceColorsGebco Create colors in a Gebco-like scheme
oceNames2whpNames Translate Oce Data Names to WHP Data Names
oceColorsTwo Create two-color palette
numberAsPOSIXct Convert a Numeric Time to a POSIXct Time
oceColorsDensity Create colors suitable for density fields
mapLongitudeLatitudeXY Convert From Longitude and Latitude to X and Y
mapLines Add Lines to a Map
mapLocator Locate Points on a Map
oceColorsVelocity Create colors suitable for velocity fields
oceDeleteData Delete Something in an oce data Slot
matrixSmooth Smooth a Matrix
matrixShiftLongitude Rearrange areal matrix so Greenwich is near the centre
oceSetData Set Something in an oce data Slot
oceColorsTemperature Create colors suitable for temperature fields
met Sample met Object
oce.as.raw Version of as.raw() that clips data
oceColorsClosure Create color functions
oceColorsTurbidity Create colors suitable for turbidity fields
oceSmooth Smooth an Oce Object
met-class Class to Store Meteorological Data
oceSpectrum Wrapper to give normalized spectrum
oceColorsJet Create colors similar to the Matlab Jet scheme
oceApprox Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
oceColorsCDOM Create colors suitable for CDOM fields
oceMagic Find the Type of an Oceanographic Data File
ocecolors Data that define some color palettes
oce.grid Add a Grid to an Existing Oce Plot
oceGetData Get Something from an oce data Slot
oceGetMetadata Get Something From an oce metadata Slot
plot,sealevel-method Plot Sealevel Data
plot,ctd-method Plot CTD Data
oceUnits2whpUnits Translate oce unit to WHP unit
oce.axis.POSIXct Oce Version of axis.POSIXct
oceColorsOxygen Create colors suitable for oxygen fields
oceColorsVorticity Create colors suitable for vorticity fields
oceSetMetadata Set Something in an oce metadata Slot
oceDeleteMetadata Delete Something in an oce metadata Slot
plot,amsr-method Plot an amsr Object
plot,odf-method Plot an ODF Object
oceColorsViridis Create colors similar to the matlab Viridis scheme
plotTS Plot Temperature-Salinity Diagram
plot,argo-method Plot Argo Data
plot,adv-method Plot ADV data
oce.plot.ts Oce Variant of plot.ts
plotTaylor Plot a Model-data Comparison Diagram
read.adp.sontek Read a Sontek ADP File
read.adp.sontek.serial Read a serial Sontek ADP file
plot,topo-method Plot a Topo Object
plot,rsk-method Plot Rsk Data
plot,windrose-method Plot Windrose data
plot,gps-method Plot a GPS Object
oce.contour Oce Variant of contour
plotScan Plot CTD data in a Low-Level Fashion
plotProfile Plot a CTD Profile
plot,ladp-method Plot an ladp object
oceColorsChlorophyll Create colors suitable for chlorophyll fields
plotInset Plot an Inset Diagram
oceColorsPalette Create a vector of colors
oceColorsPAR Create colors suitable for PAR fields
oceColors9B Create colors in a red-yellow-blue color scheme
plot,xbt-method Plot An xbt data
read.adv.nortek Read an ADV data file
read.adv Read an ADV data file
plot,lisst-method Plot LISST data
plot,adp-method Plot ADP Data
oceRenameData Rename Something in an oce data Slot
oceEdit Edit an Oce Object
plot,bremen-method Plot a Bremen Object
oceFilter Filter a time-series
oceRenameMetadata Rename Something in an oce metadata Slot
oceColorsPhase Create colors suitable for phase fields
read.coastline Read a Coastline File
read.coastline.openstreetmap Read a Coastline File in Openstreetmap Format
read.gps Read a GPS File
read.g1sst Read a G1SST file
read.adp Read an ADP File
plot,met-method Plot met Data
plot,coastline-method Plot a Coastline
read.adv.sontek.text Read an ADV data file
plotPolar Draw a Polar Plot
plot,oce-method Plot an oce Object
odf-class Class to Store ODF Data
read.rsk Read a Rsk file
plot,lobo-method Plot LOBO data
processingLogAppend Append an item to a processing log
oceColorsSalinity Create colors suitable for salinity fields
renameData Rename items in the data slot of an oce object (deprecated)
rescale Rescale values to lie in a given range
read.sealevel Read a Sealevel File
read.ctd.woce.other Read a WOCE-exchange EXPOCODE File
processingLogItem Create an item that can be inserted into a processing log
read.adp.ad2cp Read an AD2CP File
read.adp.rdi Read a Teledyne/RDI ADP File
runlm Calculate running linear models
plot,cm-method Plot CM data
read.ctd.sbe Read a Seabird CTD File
oceConvolve Convolve two time series
satellite-class Class to Store Satellite Data
shiftLongitude Shift Longitude to Range -180 to 180
read.adv.sontek.adr Read an ADV data file
prettyPosition Pretty lat/lon in deg, min, sec
plot,landsat-method Plot a landsat Object
showMetadataItem Show metadata item
oceDebug Print a debugging message
oceProject Wrapper to rgdal::project()
read.amsr Read an amsr File
processingLog<- Add an item to a processing log (in place)
rangeExtended Calculate Range, Extended a Little, as is Done for Axes
read.lisst Read a LISST File
read.ctd.woce Read a WOCE-exchange CTD File
sectionSmooth Smooth a Section
[[,coastline-method Extract Something From a Coastline Object
read.echosounder Read an Echosounder File
ocePmatch Partial matching of strings or numbers
processingLogShow Show the processing log of an oce object
plot,echosounder-method Plot Echosounder Data
plot,satellite-method Plot a satellite object
read.oce Read an Oceanographic Data File
sealevelTuktoyaktuk Sea-level data set acquired in 1975 at Tuktoyaktuk
[[,ctd-method Extract Something From a CTD Object
[[,echosounder-method Extract Something from an Echosounder Object
[[,met-method Extract Something From a met Object
[[,oce-method Extract Something From an oce Object
predict.tidem Predict a Tidal Signal
read.adp.nortek Read a Nortek ADP File
read.ctd.itp Read an ITP-type CTD File
setFlags,ctd-method Set data-quality flags within a ctd object
rsk Sample Rsk Dataset
read.adv.sontek.serial Read an ADV data file
read.bremen Read a Bremen File
rangeLimit Substitute NA for data outside a range
read.odf Read an ODF file
read.cm Read a CM file
read.lobo Read a LOBO File
parseLatLon Parse a Latitude or Longitude String
[[,sealevel-method Extract Something From a Sealevel Object
[[,section-method Extract Something From a Section Object
read.xbt.noaa1 Read a NOAA format for AXBTs
resizableLabel Provide axis names in adjustable sizes
[[,argo-method Extract Something From an Argo Object
setFlags,adp-method Set data-quality flags within a adp object
read.xbt.edf Read a Sippican '.edf' format xbt file
plot,section-method Plot a Section
[[,cm-method Extract Something From a CM Object
retime Adjust the time within Oce object
[[,lobo-method Extract Something From a LOBO Object
sealevel Sealevel data for Halifax Harbour
secondsToCtime Time interval as colon-separated string
plot,tidem-method Plot a Tidem Prediction
[[<-,landsat-method Replace Parts of a landsat Object
rsk2ctd Create a ctd Object from an rsk Object
section-class Class to Store Hydrographic Section Data
section Hydrographic section
[[<-,adp-method Replace Parts of an ADP Object
rskToc Decode table-of-contents File from a Rsk File
presentTime Get the present time, in a stated timezone
[[<-,lisst-method Replace Parts of a LISST Object
sectionSort Sort a Section
subset,met-method Subset a met Object
read.ctd.odf Read a CTD file in ODF format
read.netcdf Read a NetCDF File
rotateAboutZ Rotate velocity components within an oce object
[[<-,echosounder-method Replace Parts of an Echosounder Object
[[,lisst-method Extract Something From a LISST Object
[[,g1sst-method Extract Something From a G1SST Object
subset,adp-method Subset an ADP Object
[[<-,xbt-method Replace Parts of an xbt Object
[[,bremen-method Extract Something From a Bremen Object
[[,gps-method Extract Something From a GPS Object
read.aquadopp Read a Nortek Aquadopp File
[[,topo-method Extract Something From a Topo Object
[[<-,section-method Replace Parts of a Section Object
[[,tidem-method Extract Something From a Tidem Object
[[<-,topo-method Replace Parts of a Topo Object
plotSticks Draw a Stick Plot
read.coastline.shapefile Read a Coastline File in Shapefile Format
[[<-,tidem-method Replace Parts of a Tidem Object
[[<-,cm-method Replace Parts of a CM Object
pwelch Welch periodogram
[[<-,adv-method Replace Parts of an ADV Object
[[<-,bremen-method Replace Parts of a Bremen Object
[[<-,odf-method Replace Parts of an ODF Object
swDepth Water depth
swTheta Seawater potential temperature
[[<-,oce-method Replace Parts of an Oce Object
summary,section-method Summarize a Section Object
swAbsoluteSalinity Seawater absolute salinity, in GSW formulation
summary,ctd-method Summarize a CTD Object
read.aquadoppHR Read Nortek Aquadopp-HR File
subset,topo-method Subset a Topo Object
subset,xbt-method Subset an xbt Object
swSigma4 Seawater potential density anomaly referenced to 4000db pressure
threenum Calculate min, mean, and max values
standardizeLongitude Put longitude in the range from -180 to 180
summary,tidem-method Summarize a Tidem Object
summary,echosounder-method Summarize an Echosounder Object
swDynamicHeight Dynamic height of seawater profile
undriftTime Correct for drift in instrument clock
summary,topo-method Summarize A Topo Object
summary,sealevel-method Summarize a Sealevel Object
[[<-,g1sst-method Replace Parts of a G1SST Object
sunDeclinationRightAscension Sun Declination and Right Ascension
swSigmaT Seawater quasi-potential density anomaly
subset,cm-method Subset a CM Object
read.woa Read a World Ocean Atlas NetCDF File
sectionGrid Grid a Section in Pressure Space
read.xbt Read an xbt file
subset,adv-method Subset an ADV Object
swSigma0 Seawater potential density anomaly referenced to surface pressure
read.met Read a met File
rsk-class Class to Store Rsk Data
siderealTime Convert a POSIXt time to a sidereal time
[[<-,windrose-method Replace Parts of a Windrose Object
subset,argo-method Subset an Argo Object
[[<-,amsr-method Replace Parts of an AMSR Object
standardDepths Standard Oceanographic Depths
[[,adp-method Extract Something from an adp Object
sectionAddStation Add a CTD Station to a Section
read.aquadoppProfiler Read a Nortek Aquadopp-Profiler File
swViscosity Seawater viscosity
unduplicateNames Rename duplicated character strings
test_met_xml2.xml Sample met dataset (XML format as of October 2019)
ungrid Extract (x, y, z) from (x, y, grid)
unabbreviateYear Determine year from various abbreviations
swConservativeTemperature Seawater conservative temperature, in GSW formulation
read.landsat Read a landsat File Directory
read.argo Read an Argo Data File
summary,cm-method Summarize a CM Object
read.ctd Read a General CTD File
subset,oce-method Subset an oce Object
xbt-class Class to Store XBT Data
write.ctd Write a CTD Data Object as a CSV File
summary,adv-method Summarize an ADV object
[[,odf-method Extract Something From an ODF Object
subset,amsr-method Subset an amsr Object
[[,rsk-method Extract Something From a Rsk Object
swCSTp Electrical conductivity ratio from salinity, temperature and pressure
subset,odf-method Subset an ODF object
summary,ladp-method Summarize an ladp object
read.section Read a Section File
read.topo Read a Topo File
read.index Read a NOAA ocean index file
[[,adv-method Extract Something from an adv Object
subset,rsk-method Subset a Rsk Object
summary,gps-method Summarize a GPS Object
summary,oce-method Summarize an oce Object
[[<-,argo-method Replace Parts of an Argo Object
swPressure Water pressure
unwrapAngle Unwrap an angle that suffers modulo-360 problems
subset,ctd-method Subset a CTD Object
subset,coastline-method Subset a Coastline Object
summary,odf-method Summarize an ODF Object
window.oce Window an Oce Object by Time or Distance
sunAngle Solar Angle as Function of Space and Time
usrLonLat Calculate lon-lat coordinates of plot-box trace
swSigma Seawater density anomaly
swTSrho Seawater temperature from salinity and density
summary,bremen-method Summarize a Bremen Object
[[<-,ctd-method Replace Parts of a CTD Object
rskPatm Estimate Atmospheric Pressure in Rsk Object
sealevel-class Class to Store Sealevel Data
setFlags,oce-method Set data-quality flags within a oce object
setFlags Set data-quality flags within a oce object
[[,ladp-method Extract Something From an ladp Object
[[<-,rsk-method Replace Parts of a Rsk Object
[[,landsat-method Extract Something From a landsat Object
swAlphaOverBeta Ratio of seawater thermal expansion coefficient to haline contraction coefficient
[[,amsr-method Extract Something From an amsr Object
[[<-,coastline-method Replace Parts of a Coastline Object
[[<-,gps-method Replace Parts of a GPS Object
swAlpha Seawater thermal expansion coefficient
summary,rsk-method Summarize a Rsk Object
summary,argo-method Summarize an Argo Object
swSigma2 Seawater potential density anomaly referenced to 2000db pressure
summary,satellite-method Summarize a satellite object
[[,windrose-method Extract Something From a Windrose Object
[[,xbt-method Extract Something From an xbt Object
subset,section-method Subset a Section Object
tidemVuf Nodal Modulation Calculations for Tidem
[[<-,lobo-method Replace Parts of a LOBO Object
[[<-,met-method Replace Parts of a met Object
swLapseRate Seawater lapse rate
subtractBottomVelocity Subtract Bottom Velocity from ADP
swSigma1 Seawater potential density anomaly referenced to 1000db pressure
summary,landsat-method Summarize a landsat Object
summary,amsr-method Summarize an AMSR Object
summary,lisst-method Summarize a LISST Object
summary,adp-method Summarize an ADP Object
summary,windrose-method Summarize a windrose object
tidem-class Class to Store Tidal Models
[[<-,ladp-method title Replace Parts of a ladp Object
tidemAstron Astronomical Calculations for Tidem
subset,lobo-method Subset a LOBO Object
subset,sealevel-method Subset a Sealevel Object
summary,lobo-method Summarize a LOBO Object
[[<-,sealevel-method Replace Parts of a Sealevel Object
subset,echosounder-method Subset an Echosounder Object
summary,coastline-method Summarize a Coastline Object
swSigmaTheta Seawater potential density anomaly
wind Wind dataset
swRrho Density ratio
swRho Seawater density
xyzToEnuAdpAD2CP Convert ADP2CP adp object From XYZ to ENU Coordinates
vectorShow Show some values from a vector
summary,xbt-method Summarize an xbt Object
swSigma3 Seawater potential density anomaly referenced to 3000db pressure
woceNames2oceNames Translate WOCE Data Names to Oce Data Names
swN2 Squared buoyancy frequency for seawater
test_met_csv1.csv Sample met dataset (CSV format prior to October 2019)
topoWorld Global Topographic Dataset at Half-degree Resolution
swSpice Seawater spiciness
summary,met-method Summarize a met Object
swTFreeze Seawater freezing temperature
swSoundAbsorption Seawater sound absorption in dB/m
tail.oce Extract the End of an Oce Object
swSoundSpeed Seawater sound speed
swSTrho Seawater salinity from temperature and density
swSCTp Practical salinity from electrical conductivity, temperature and pressure
swBeta Seawater haline contraction coefficient
swZ Vertical coordinate
utm2lonlat Convert UTM to Longitude and Latitude
xyzToEnuAdv Convert an ADP from XYZ to ENU Coordinates
unitFromStringRsk Infer Rsk units from a vector of strings
xyzToEnu Convert Acoustic-Doppler Data From xyz to enu Coordinates
tidedata Tidal Constituent Information
swSpecificHeat Seawater specific heat Source= http://sam.ucsd.edu/sio210/propseawater/ppsw_fortran/ppsw.f check value: cpsw = 3849.500 j/(kg deg. c) for s = 40 (ipss-78),
toEnuAdp Convert an ADP Object to ENU Coordinates
tidem Fit a Tidal Model to a Timeseries
test_met_csv2.csv Sample met dataset (CSV format as of October 2019)
toEnu Rotate acoustic-Doppler data to the enu coordinate system
tidemConstituentNameFix Change tidal constituent name from T-TIDE to Foreman convention
webtide Get a Tidal Prediction from a WebTide Database
useHeading Replace the Heading for One Instrument With That of Another
titleCase Capitalize first letter of each of a vector of words
toEnuAdv Convert an ADV Object to ENU Coordinates
swThermalConductivity Seawater thermal conductivity
topo-class Class to Store Topographic Data
xbt.edf Sample xbt dataset
xyzToEnuAdp Convert ADP From XYZ to ENU Coordinates
unitFromString Decode units, from strings
xbt An XBT Object
topoInterpolate Interpolate Within a Topo Object
windrose-class Class to Store Windrose Data
trimString Remove leading and trailing whitespace from strings
velocityStatistics Report Statistics of adp or adv Velocities
woceUnit2oceUnit Translate WOCE units to oce units
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Type Package
BugReports https://github.com/dankelley/oce/issues
License GPL (>= 2)
Encoding UTF-8
URL https://dankelley.github.io/oce
LazyData false
RoxygenNote 7.0.2
BuildVignettes true
VignetteBuilder knitr
NeedsCompilation yes
LinkingTo Rcpp
Packaged 2020-02-21 16:35:20 UTC; kelley
Repository CRAN
Date/Publication 2020-02-21 17:40:02 UTC

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