oce v1.2-0

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by Dan Kelley View Source

Analysis of Oceanographic Data

Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively in Dan Kelley's book Oceanographic Analysis with R, published in 2018 by 'Springer-Verlag' with ISBN 978-1-4939-8842-6.

Readme

oce

RStudio CRAN mirror downloads

Oce is an R package for processing oceanographic data. Its webpage provides details, of which this README file is just a sketch.

Stable versions of the package are normally installed from within R, in the same way as other packages. However, this version is only updated a few times a year (pursuant to CRAN policy), so many users install the develop branch instead. This branch may be updated several times per day, as the authors fix bugs or add features that are motivated by day-to-day usage. This is the branch favoured by users who need new features or would like to contribute to Oce development.

The easy way to install the develop branch is to execute the following commands in R.

library(devtools)
install_github('dankelley/oce', ref='develop')

and most readers should also install Ocedata, with

install_github('dankelley/ocedata', ref='master')

Oce is emphatically an open-source system, and so the participation of users is very important. This is why Git is used for version control of the Oce source code, and why GitHub is the host for that code. All users are invited to take part in the development process, by suggesting features, by reporting bugs, or just by watching as others do such things. Oceanography is a collaborative discipline, so it makes sense that the evolution of Oce be similarly collaborative.

Functions in oce

Name	Description
T90fromT68	Convert from IPTS-68 to ITS-90 temperature
ODF2oce	Create ODF object from the output of ODF::read_ODF().
abbreviateTimeLabels	Abbreviate a vector of times by removing commonalities
GMTOffsetFromTz	Determine time offset from timezone
ODFNames2oceNames	Translate from ODF Names to Oce Names
CTD_BCD2014666_008_1_DN.ODF.gz	Sample ctd dataset in odf format
T90fromT48	Convert from ITS-48 to ITS-90 temperature
ODFListFromHeader	Create a list of ODF header metadata
T68fromT90	Convert from ITS-90 to IPTS-68 temperature
ad2cpHeaderValue	Decode an item from a Nortek AD2CP file header
adpEnsembleAverage	Ensemble Average an ADP Object in Time
adp_rdi.000	Sample RDI Teledyne adp dataset in format
adp	ADP (acoustic-doppler profiler) dataset
adp-class	Class to Store adp (ADCP) Data
adv-class	Class to Store adv Data
adv	ADV (acoustic-doppler velocimeter) dataset
argo	ARGO float dataset
argo-class	Class to Store Argo Data
airRho	Air density
approx3d	Trilinear interpolation in a 3D array
amsr-class	Class to Store AMSR-2 Satellite Data
as.coastline	Coerce Data into a Coastline Object
as.cm	Coerce data into a CM object
as.argo	Coerce Data Into an Argo Dataset
as.adp	Create an ADP Object
as.met	Coerce Data into met Object
angleRemap	Convert angles from 0:360 to -180:180
argoGrid	Grid Argo float data
applyMagneticDeclination	Earth magnetic declination
argoNames2oceNames	Convert Argo Data Name to Oce Name
as.ctd	Coerce data into CTD object
as.rsk	Coerce Data Into a Rsk Object
as.echosounder	Coerce Data into an Echosounder Object
as.topo	Coerce Data into Topo Object
as.unit	Convert a String to a Unit
as.gps	Coerce data into a GPS dataset
as.windrose	Create a Windrose Object
argShow	Show an argument to a function, e.g. for debugging
as.xbt	Create an xbt object
as.ladp	Coerce data into an ladp object
binCount1D	Bin-count vector data
bcdToInteger	Decode BCD to integer
binAverage	Bin-average a vector y, based on x values
as.lisst	Coerce Data Into a LISST Object
as.lobo	Coerce Data into a Lobo Object
binApply1D	Apply a function to vector data
byteToBinary	Format bytes as binary defunct
beamToXyzAdp	Convert ADP From Beam to XYZ Coordinates
beamToXyz	Change ADV or ADP coordinate systems
as.sealevel	Coerce Data Into a Sealevel Object
beamToXyzAdpAD2CP	Convert AD2CP-style adp data From Beam to XYZ Coordinates
cm	A Current Meter (cm) Object
cm-class	Class to Store Current Meter Data
cnvName2oceName	Infer variable name, units and scale from a Seabird (.cnv) header line
composite	Create a composite object by averaging across good data
beamToXyzAdv	Convert ADV from Beam to XYZ Coordinates
as.oce	Coerce Something Into an Oce Object
as.section	Create a Section
concatenate,adp-method	Concatenate adp objects
as.tidem	Create tidem object from fitted harmonic data
beamUnspreadAdp	Adjust ADP Signal for Spherical Spreading
beamName	Get names of Acoustic-Doppler Beams
composite,list-method	Composite by Averaging Across Data
concatenate,oce-method	Concatenate oce objects
concatenate	Concatenate oce objects
ctdDecimate	Decimate a CTD profile
ctdFindProfiles	Find Profiles within a Tow-Yow CTD Record
detrend	Detrend a set of observations
download.amsr	Download and Cache an amsr File
coriolis	Coriolis parameter on rotating earth
decodeHeaderNortek	Decode a Nortek Header
ctd-class	Class to Store CTD (or general hydrographic) Data
bilinearInterp	Bilinear Interpolation Within a Grid
decodeTime	Oce Version of as.POSIXct
coastlineCut	Cut a Coastline Object at Specified Longitude
coastlineWorld	World Coastline
d200321-001.ctd	Sample ctd dataset in .ctd format
coastline-class	Class to Store Coastline Data
binMean1D	Bin-average f=f(x)
binCount2D	Bin-count matrix data
drawPalette	Draw a palette, leaving margins suitable for accompanying plot
drawIsopycnals	Add Isopycnal Curves to TS Plot
concatenate,list-method	Concatenate a list of oce objects
binApply2D	Apply a function to matrix data
bound125	Calculate a rounded bound, rounded up to mantissa 1, 2, or 5
dataLabel	Try to associate data names with units, for use by summary()
equatorialToLocalHorizontal	Convert equatorial to local horizontal coordinate
binmapAdp	Bin-map an ADP object
binMean2D	Bin-average f=f(x,y)
bremen-class	Class to Store Bremen-formatted Data
errorbars	Draw error bars on an existing xy diagram
composite,amsr-method	Create a composite of amsr satellite data
ctimeToSeconds	Interpret a character string as a time interval
curl	Curl of 2D vector field
enuToOtherAdv	Convert ENU to Other Coordinate
colormap	Calculate color map
ctd	A CTD profile in Halifax Harbour
handleFlags,adp-method	Handle Flags in adp Objects
gravity	Acceleration due to earth gravity
ctd.cnv	Sample ctd dataset in .cnv format
decimate	Smooth and Decimate, or Subsample, an Oce Object
defaultFlags	Suggest a default flag vector for bad or suspicious data
drawDirectionField	Draw a Direction Field
findInOrdered	Find indices of times in an ordered vector (defunct)
geodDist	Compute Geodesic Distance on Surface of Earth
download.topo	Download and Cache a topo File
despike	Remove spikes from a time series
coastlineBest	Find the Name of the Best Coastline Object
imagep	Plot an Image with a Color Palette
firstFinite	Get first finite value in a vector or array, or NULL if none
eclipticalToEquatorial	Convert ecliptical to equatorial coordinate
handleFlags,vector-method	Signal erroneous application to non-oce objects
handleFlags	Handle flags in oce objects
download.coastline	Download a coastline File
ctdTrim	Trim Beginning and Ending of a CTD cast
ctdRaw	Seawater CTD Profile, Without Trimming of Extraneous Data
echosounder	Echosounder Dataset
initializeFlagScheme,oce-method	Establish a data-quality scheme for a oce object
initializeFlagScheme,ctd-method	Establish a data-quality scheme for a ctd object
initialize,ctd-method	Initialize storage for a ctd object
geodGc	Great-circle Segments Between Points on Earth
initializeFlagsInternal	Create storage for a flag, and initialize values, for a oce object
d201211_0011.cnv	Sample ctd dataset in .cnv format
formatCI	Confidence interval in parenthetic notation
echosounder-class	Class to Store Echosounder Data
enuToOther	Rotate acoustic-Doppler data to a new coordinate system
handleFlags,oce-method	Handle flags in oce objects
fullFilename	Full name of file, including path
julianCenturyAnomaly	Julian-Day number to Julian century
is.ad2cp	Test whether object is an AD2CP type
enuToOtherAdp	Convert ADP ENU to Rotated Coordinate
lon360	Alter longitudes from -180:180 to 0:360 convention
interpBarnes	Grid data using Barnes algorithm
lobo-class	Class to Store LOBO Data
handleFlags,section-method	Handle flags in Section Objects
integerToAscii	Decode integer to corresponding ASCII code
formatPosition	Format Geographical Position in Degrees and Minutes
g1sst-class	Class to Store G1SST Satellite-model Data
lonFormat	Format a longitude
download.met	Download and Cache a met File
handleFlags,argo-method	Handle Flags in ARGO Objects
landsatTrim	Trim a landsat Image to a Geographical Region
map2lonlat	Convert X and Y to Longitude and Latitude
latFormat	Format a latitude
landsat-class	Class to Store landsat Data
initializeFlagScheme,section-method	Establish a data-quality scheme for a section object
landsat	Sample landsat Dataset
initializeFlagScheme	Establish a data-quality scheme for a oce object
landsatAdd	Add a Band to a landsat Object
lobo	LOBO Dataset
mapContour	Add Contours on a Existing map
mapAxis	Add Axis Labels to an Existing Map
geodXy	Convert From Geographical to Geodesic Coordinates
latlonFormat	Format a latitude-longitude pair
geodXyInverse	Inverse Geodesic Calculation
gps-class	Class to Store GPS Data
handleFlags,ctd-method	Handle Flags in CTD Objects
findBottom	Find the Ocean Bottom in an Echosounder Object
fillGap	Fill a gap in an oce object
handleFlagsInternal	Low-level function for handling data-quality flags
lisst	LISST Dataset
head.oce	Extract The Start of an Oce Object
initializeFlags	Create storage for a flag, and initialize values, for a oce object
initializeFlags,oce-method	Create storage for a flag, and initialize values, for a oce object
magneticField	Earth magnetic declination, inclination, and intensity
mapDirectionField	Add a Direction Field to an Existing Map
grad	Calculate Matrix Gradient
initializeFlagSchemeInternal	Establish a data-quality scheme for a oce object
mapArrows	Add Arrows to a Map
lookWithin	Look Within the First Element of a List for Replacement Values
mapGrid	Add a Longitude and Latitude Grid to a Map
ladp-class	Class to Store Lowered-adp Data
lowpass	Perform lowpass digital filtering
mapImage	Add an Image to a Map
initializeFlags,adp-method	Create storage for a flag, and initialize values, for a adp object
mapText	Add Text to a Map
mapScalebar	Add a Scalebar to a Map
metNames2oceNames	Convert met Data Name to Oce Name
moonAngle	Lunar Angle as Function of Space and Time
numberAsHMS	Convert a Numeric Time to Hour, Minute, and Second
mapPolygon	Add a Polygon to a Map
oceCRS	Coordinate Reference System strings for some oceans
mapPoints	Add Points to a Map
oce.write.table	Write the Data Portion of Object to a File
julianDay	Convert a POSIXt time to a Julian day
lonlat2map	Convert Longitude and Latitude to X and Y
lonlat2utm	Convert Longitude and Latitude to UTM
oce-class	Base Class for oce Objects
mapTissot	Add Tissot Indicatrices to a Map
oce-deprecated	Deprecated and Defunct Elements of the oce package
matchBytes	Locate byte sequences in a raw vector
lisst-class	Class to Store LISST Data
integrateTrapezoid	Trapezoidal Integration
mapPlot	Draw a Map
oce	oce: A Package for Oceanographic Analysis.
makeFilter	Make a digital filter
mapCoordinateSystem	Draw a coordinate system
oceColorsFreesurface	Create colors suitable for freesurface fields
oceColorsGebco	Create colors in a Gebco-like scheme
oceNames2whpNames	Translate Oce Data Names to WHP Data Names
oceColorsTwo	Create two-color palette
numberAsPOSIXct	Convert a Numeric Time to a POSIXct Time
oceColorsDensity	Create colors suitable for density fields
mapLongitudeLatitudeXY	Convert From Longitude and Latitude to X and Y
mapLines	Add Lines to a Map
mapLocator	Locate Points on a Map
oceColorsVelocity	Create colors suitable for velocity fields
oceDeleteData	Delete Something in an oce data Slot
matrixSmooth	Smooth a Matrix
matrixShiftLongitude	Rearrange areal matrix so Greenwich is near the centre
oceSetData	Set Something in an oce data Slot
oceColorsTemperature	Create colors suitable for temperature fields
met	Sample met Object
oce.as.raw	Version of as.raw() that clips data
oceColorsClosure	Create color functions
oceColorsTurbidity	Create colors suitable for turbidity fields
oceSmooth	Smooth an Oce Object
met-class	Class to Store Meteorological Data
oceSpectrum	Wrapper to give normalized spectrum
oceColorsJet	Create colors similar to the Matlab Jet scheme
oceApprox	Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
oceColorsCDOM	Create colors suitable for CDOM fields
oceMagic	Find the Type of an Oceanographic Data File
ocecolors	Data that define some color palettes
oce.grid	Add a Grid to an Existing Oce Plot
oceGetData	Get Something from an oce data Slot
oceGetMetadata	Get Something From an oce metadata Slot
plot,sealevel-method	Plot Sealevel Data
plot,ctd-method	Plot CTD Data
oceUnits2whpUnits	Translate oce unit to WHP unit
oce.axis.POSIXct	Oce Version of axis.POSIXct
oceColorsOxygen	Create colors suitable for oxygen fields
oceColorsVorticity	Create colors suitable for vorticity fields
oceSetMetadata	Set Something in an oce metadata Slot
oceDeleteMetadata	Delete Something in an oce metadata Slot
plot,amsr-method	Plot an amsr Object
plot,odf-method	Plot an ODF Object
oceColorsViridis	Create colors similar to the matlab Viridis scheme
plotTS	Plot Temperature-Salinity Diagram
plot,argo-method	Plot Argo Data
plot,adv-method	Plot ADV data
oce.plot.ts	Oce Variant of plot.ts
plotTaylor	Plot a Model-data Comparison Diagram
read.adp.sontek	Read a Sontek ADP File
read.adp.sontek.serial	Read a serial Sontek ADP file
plot,topo-method	Plot a Topo Object
plot,rsk-method	Plot Rsk Data
plot,windrose-method	Plot Windrose data
plot,gps-method	Plot a GPS Object
oce.contour	Oce Variant of contour
plotScan	Plot CTD data in a Low-Level Fashion
plotProfile	Plot a CTD Profile
plot,ladp-method	Plot an ladp object
oceColorsChlorophyll	Create colors suitable for chlorophyll fields
plotInset	Plot an Inset Diagram
oceColorsPalette	Create a vector of colors
oceColorsPAR	Create colors suitable for PAR fields
oceColors9B	Create colors in a red-yellow-blue color scheme
plot,xbt-method	Plot An xbt data
read.adv.nortek	Read an ADV data file
read.adv	Read an ADV data file
plot,lisst-method	Plot LISST data
plot,adp-method	Plot ADP Data
oceRenameData	Rename Something in an oce data Slot
oceEdit	Edit an Oce Object
plot,bremen-method	Plot a Bremen Object
oceFilter	Filter a time-series
oceRenameMetadata	Rename Something in an oce metadata Slot
oceColorsPhase	Create colors suitable for phase fields
read.coastline	Read a Coastline File
read.coastline.openstreetmap	Read a Coastline File in Openstreetmap Format
read.gps	Read a GPS File
read.g1sst	Read a G1SST file
read.adp	Read an ADP File
plot,met-method	Plot met Data
plot,coastline-method	Plot a Coastline
read.adv.sontek.text	Read an ADV data file
plotPolar	Draw a Polar Plot
plot,oce-method	Plot an oce Object
odf-class	Class to Store ODF Data
read.rsk	Read a Rsk file
plot,lobo-method	Plot LOBO data
processingLogAppend	Append an item to a processing log
oceColorsSalinity	Create colors suitable for salinity fields
renameData	Rename items in the data slot of an oce object (deprecated)
rescale	Rescale values to lie in a given range
read.sealevel	Read a Sealevel File
read.ctd.woce.other	Read a WOCE-exchange EXPOCODE File
processingLogItem	Create an item that can be inserted into a processing log
read.adp.ad2cp	Read an AD2CP File
read.adp.rdi	Read a Teledyne/RDI ADP File
runlm	Calculate running linear models
plot,cm-method	Plot CM data
read.ctd.sbe	Read a Seabird CTD File
oceConvolve	Convolve two time series
satellite-class	Class to Store Satellite Data
shiftLongitude	Shift Longitude to Range -180 to 180
read.adv.sontek.adr	Read an ADV data file
prettyPosition	Pretty lat/lon in deg, min, sec
plot,landsat-method	Plot a landsat Object
showMetadataItem	Show metadata item
oceDebug	Print a debugging message
oceProject	Wrapper to rgdal::project()
read.amsr	Read an amsr File
processingLog<-	Add an item to a processing log (in place)
rangeExtended	Calculate Range, Extended a Little, as is Done for Axes
read.lisst	Read a LISST File
read.ctd.woce	Read a WOCE-exchange CTD File
sectionSmooth	Smooth a Section
[[,coastline-method	Extract Something From a Coastline Object
read.echosounder	Read an Echosounder File
ocePmatch	Partial matching of strings or numbers
processingLogShow	Show the processing log of an oce object
plot,echosounder-method	Plot Echosounder Data
plot,satellite-method	Plot a satellite object
read.oce	Read an Oceanographic Data File
sealevelTuktoyaktuk	Sea-level data set acquired in 1975 at Tuktoyaktuk
[[,ctd-method	Extract Something From a CTD Object
[[,echosounder-method	Extract Something from an Echosounder Object
[[,met-method	Extract Something From a met Object
[[,oce-method	Extract Something From an oce Object
predict.tidem	Predict a Tidal Signal
read.adp.nortek	Read a Nortek ADP File
read.ctd.itp	Read an ITP-type CTD File
setFlags,ctd-method	Set data-quality flags within a ctd object
rsk	Sample Rsk Dataset
read.adv.sontek.serial	Read an ADV data file
read.bremen	Read a Bremen File
rangeLimit	Substitute NA for data outside a range
read.odf	Read an ODF file
read.cm	Read a CM file
read.lobo	Read a LOBO File
parseLatLon	Parse a Latitude or Longitude String
[[,sealevel-method	Extract Something From a Sealevel Object
[[,section-method	Extract Something From a Section Object
read.xbt.noaa1	Read a NOAA format for AXBTs
resizableLabel	Provide axis names in adjustable sizes
[[,argo-method	Extract Something From an Argo Object
setFlags,adp-method	Set data-quality flags within a adp object
read.xbt.edf	Read a Sippican '.edf' format xbt file
plot,section-method	Plot a Section
[[,cm-method	Extract Something From a CM Object
retime	Adjust the time within Oce object
[[,lobo-method	Extract Something From a LOBO Object
sealevel	Sealevel data for Halifax Harbour
secondsToCtime	Time interval as colon-separated string
plot,tidem-method	Plot a Tidem Prediction
[[<-,landsat-method	Replace Parts of a landsat Object
rsk2ctd	Create a ctd Object from an rsk Object
section-class	Class to Store Hydrographic Section Data
section	Hydrographic section
[[<-,adp-method	Replace Parts of an ADP Object
rskToc	Decode table-of-contents File from a Rsk File
presentTime	Get the present time, in a stated timezone
[[<-,lisst-method	Replace Parts of a LISST Object
sectionSort	Sort a Section
subset,met-method	Subset a met Object
read.ctd.odf	Read a CTD file in ODF format
read.netcdf	Read a NetCDF File
rotateAboutZ	Rotate velocity components within an oce object
[[<-,echosounder-method	Replace Parts of an Echosounder Object
[[,lisst-method	Extract Something From a LISST Object
[[,g1sst-method	Extract Something From a G1SST Object
subset,adp-method	Subset an ADP Object
[[<-,xbt-method	Replace Parts of an xbt Object
[[,bremen-method	Extract Something From a Bremen Object
[[,gps-method	Extract Something From a GPS Object
read.aquadopp	Read a Nortek Aquadopp File
[[,topo-method	Extract Something From a Topo Object
[[<-,section-method	Replace Parts of a Section Object
[[,tidem-method	Extract Something From a Tidem Object
[[<-,topo-method	Replace Parts of a Topo Object
plotSticks	Draw a Stick Plot
read.coastline.shapefile	Read a Coastline File in Shapefile Format
[[<-,tidem-method	Replace Parts of a Tidem Object
[[<-,cm-method	Replace Parts of a CM Object
pwelch	Welch periodogram
[[<-,adv-method	Replace Parts of an ADV Object
[[<-,bremen-method	Replace Parts of a Bremen Object
[[<-,odf-method	Replace Parts of an ODF Object
swDepth	Water depth
swTheta	Seawater potential temperature
[[<-,oce-method	Replace Parts of an Oce Object
summary,section-method	Summarize a Section Object
swAbsoluteSalinity	Seawater absolute salinity, in GSW formulation
summary,ctd-method	Summarize a CTD Object
read.aquadoppHR	Read Nortek Aquadopp-HR File
subset,topo-method	Subset a Topo Object
subset,xbt-method	Subset an xbt Object
swSigma4	Seawater potential density anomaly referenced to 4000db pressure
threenum	Calculate min, mean, and max values
standardizeLongitude	Put longitude in the range from -180 to 180
summary,tidem-method	Summarize a Tidem Object
summary,echosounder-method	Summarize an Echosounder Object
swDynamicHeight	Dynamic height of seawater profile
undriftTime	Correct for drift in instrument clock
summary,topo-method	Summarize A Topo Object
summary,sealevel-method	Summarize a Sealevel Object
[[<-,g1sst-method	Replace Parts of a G1SST Object
sunDeclinationRightAscension	Sun Declination and Right Ascension
swSigmaT	Seawater quasi-potential density anomaly
subset,cm-method	Subset a CM Object
read.woa	Read a World Ocean Atlas NetCDF File
sectionGrid	Grid a Section in Pressure Space
read.xbt	Read an xbt file
subset,adv-method	Subset an ADV Object
swSigma0	Seawater potential density anomaly referenced to surface pressure
read.met	Read a met File
rsk-class	Class to Store Rsk Data
siderealTime	Convert a POSIXt time to a sidereal time
[[<-,windrose-method	Replace Parts of a Windrose Object
subset,argo-method	Subset an Argo Object
[[<-,amsr-method	Replace Parts of an AMSR Object
standardDepths	Standard Oceanographic Depths
[[,adp-method	Extract Something from an adp Object
sectionAddStation	Add a CTD Station to a Section
read.aquadoppProfiler	Read a Nortek Aquadopp-Profiler File
swViscosity	Seawater viscosity
unduplicateNames	Rename duplicated character strings
test_met_xml2.xml	Sample met dataset (XML format as of October 2019)
ungrid	Extract (x, y, z) from (x, y, grid)
unabbreviateYear	Determine year from various abbreviations
swConservativeTemperature	Seawater conservative temperature, in GSW formulation
read.landsat	Read a landsat File Directory
read.argo	Read an Argo Data File
summary,cm-method	Summarize a CM Object
read.ctd	Read a General CTD File
subset,oce-method	Subset an oce Object
xbt-class	Class to Store XBT Data
write.ctd	Write a CTD Data Object as a CSV File
summary,adv-method	Summarize an ADV object
[[,odf-method	Extract Something From an ODF Object
subset,amsr-method	Subset an amsr Object
[[,rsk-method	Extract Something From a Rsk Object
swCSTp	Electrical conductivity ratio from salinity, temperature and pressure
subset,odf-method	Subset an ODF object
summary,ladp-method	Summarize an ladp object
read.section	Read a Section File
read.topo	Read a Topo File
read.index	Read a NOAA ocean index file
[[,adv-method	Extract Something from an adv Object
subset,rsk-method	Subset a Rsk Object
summary,gps-method	Summarize a GPS Object
summary,oce-method	Summarize an oce Object
[[<-,argo-method	Replace Parts of an Argo Object
swPressure	Water pressure
unwrapAngle	Unwrap an angle that suffers modulo-360 problems
subset,ctd-method	Subset a CTD Object
subset,coastline-method	Subset a Coastline Object
summary,odf-method	Summarize an ODF Object
window.oce	Window an Oce Object by Time or Distance
sunAngle	Solar Angle as Function of Space and Time
usrLonLat	Calculate lon-lat coordinates of plot-box trace
swSigma	Seawater density anomaly
swTSrho	Seawater temperature from salinity and density
summary,bremen-method	Summarize a Bremen Object
[[<-,ctd-method	Replace Parts of a CTD Object
rskPatm	Estimate Atmospheric Pressure in Rsk Object
sealevel-class	Class to Store Sealevel Data
setFlags,oce-method	Set data-quality flags within a oce object
setFlags	Set data-quality flags within a oce object
[[,ladp-method	Extract Something From an ladp Object
[[<-,rsk-method	Replace Parts of a Rsk Object
[[,landsat-method	Extract Something From a landsat Object
swAlphaOverBeta	Ratio of seawater thermal expansion coefficient to haline contraction coefficient
[[,amsr-method	Extract Something From an amsr Object
[[<-,coastline-method	Replace Parts of a Coastline Object
[[<-,gps-method	Replace Parts of a GPS Object
swAlpha	Seawater thermal expansion coefficient
summary,rsk-method	Summarize a Rsk Object
summary,argo-method	Summarize an Argo Object
swSigma2	Seawater potential density anomaly referenced to 2000db pressure
summary,satellite-method	Summarize a satellite object
[[,windrose-method	Extract Something From a Windrose Object
[[,xbt-method	Extract Something From an xbt Object
subset,section-method	Subset a Section Object
tidemVuf	Nodal Modulation Calculations for Tidem
[[<-,lobo-method	Replace Parts of a LOBO Object
[[<-,met-method	Replace Parts of a met Object
swLapseRate	Seawater lapse rate
subtractBottomVelocity	Subtract Bottom Velocity from ADP
swSigma1	Seawater potential density anomaly referenced to 1000db pressure
summary,landsat-method	Summarize a landsat Object
summary,amsr-method	Summarize an AMSR Object
summary,lisst-method	Summarize a LISST Object
summary,adp-method	Summarize an ADP Object
summary,windrose-method	Summarize a windrose object
tidem-class	Class to Store Tidal Models
[[<-,ladp-method	title Replace Parts of a ladp Object
tidemAstron	Astronomical Calculations for Tidem
subset,lobo-method	Subset a LOBO Object
subset,sealevel-method	Subset a Sealevel Object
summary,lobo-method	Summarize a LOBO Object
[[<-,sealevel-method	Replace Parts of a Sealevel Object
subset,echosounder-method	Subset an Echosounder Object
summary,coastline-method	Summarize a Coastline Object
swSigmaTheta	Seawater potential density anomaly
wind	Wind dataset
swRrho	Density ratio
swRho	Seawater density
xyzToEnuAdpAD2CP	Convert ADP2CP adp object From XYZ to ENU Coordinates
vectorShow	Show some values from a vector
summary,xbt-method	Summarize an xbt Object
swSigma3	Seawater potential density anomaly referenced to 3000db pressure
woceNames2oceNames	Translate WOCE Data Names to Oce Data Names
swN2	Squared buoyancy frequency for seawater
test_met_csv1.csv	Sample met dataset (CSV format prior to October 2019)
topoWorld	Global Topographic Dataset at Half-degree Resolution
swSpice	Seawater spiciness
summary,met-method	Summarize a met Object
swTFreeze	Seawater freezing temperature
swSoundAbsorption	Seawater sound absorption in dB/m
tail.oce	Extract the End of an Oce Object
swSoundSpeed	Seawater sound speed
swSTrho	Seawater salinity from temperature and density
swSCTp	Practical salinity from electrical conductivity, temperature and pressure
swBeta	Seawater haline contraction coefficient
swZ	Vertical coordinate
utm2lonlat	Convert UTM to Longitude and Latitude
xyzToEnuAdv	Convert an ADP from XYZ to ENU Coordinates
unitFromStringRsk	Infer Rsk units from a vector of strings
xyzToEnu	Convert Acoustic-Doppler Data From xyz to enu Coordinates
tidedata	Tidal Constituent Information
swSpecificHeat	Seawater specific heat Source= http://sam.ucsd.edu/sio210/propseawater/ppsw_fortran/ppsw.f check value: cpsw = 3849.500 j/(kg deg. c) for s = 40 (ipss-78),
toEnuAdp	Convert an ADP Object to ENU Coordinates
tidem	Fit a Tidal Model to a Timeseries
test_met_csv2.csv	Sample met dataset (CSV format as of October 2019)
toEnu	Rotate acoustic-Doppler data to the enu coordinate system
tidemConstituentNameFix	Change tidal constituent name from T-TIDE to Foreman convention
webtide	Get a Tidal Prediction from a WebTide Database
useHeading	Replace the Heading for One Instrument With That of Another
titleCase	Capitalize first letter of each of a vector of words
toEnuAdv	Convert an ADV Object to ENU Coordinates
swThermalConductivity	Seawater thermal conductivity
topo-class	Class to Store Topographic Data
xbt.edf	Sample xbt dataset
xyzToEnuAdp	Convert ADP From XYZ to ENU Coordinates
unitFromString	Decode units, from strings
xbt	An XBT Object
topoInterpolate	Interpolate Within a Topo Object
windrose-class	Class to Store Windrose Data
trimString	Remove leading and trailing whitespace from strings
velocityStatistics	Report Statistics of adp or adv Velocities
woceUnit2oceUnit	Translate WOCE units to oce units
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Vignettes of oce

Name
adp.Rmd
ctd-object.png
ctd.Rmd
flags.Rmd
map_projections.Rmd
oce.Rmd
subclassing.Rmd
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Details

Type	Package
BugReports	https://github.com/dankelley/oce/issues
License	GPL (>= 2)
Encoding	UTF-8
URL	https://dankelley.github.io/oce
LazyData	false
RoxygenNote	7.0.2
BuildVignettes	true
VignetteBuilder	knitr
NeedsCompilation	yes
LinkingTo	Rcpp
Packaged	2020-02-21 16:35:20 UTC; kelley
Repository	CRAN
Date/Publication	2020-02-21 17:40:02 UTC

suggests	akima , automap , DBI , foreign , knitr , lubridate , ncdf4 , ocedata , R.utils , raster (>= 1.4.3) , rgdal , rgeos , rmarkdown , RSQLite , sf , sp , tiff , XML
depends	gsw , methods , R (>= 2.15) , testthat , utils
imports	Rcpp
Contributors	British Geological Survey, Clark Richards, Chantelle Layton