make_haplo_grobs

Multiple tools are now available for inferring the personalised
germ line set from an adaptive immune receptor repertoire.
Output from these tools is converted to
a single format and supplemented with rich data such as usage and
characterisation of 'novel' germ line alleles. This data can be
particularly useful when considering the validity of novel inferences. Use
of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.

William Lees

ogrdbstats

Analysis of Adaptive Immune Receptor Repertoire Germ Line
Statistics

make_haplo_grobs function

<dl><dt>segment</dt>
<dd>one of V, D, J</dd>
<dt>haplo_details</dt>
<dd>Data structure created by create_haplo_details</dd></dl>

Arguments

Create haplotyping plots — make_haplo_grobs

<dl>

<dt>segment</dt>
<dd>one of V, D, J</dd>


<dt>haplo_details</dt>
<dd>Data structure created by create_haplo_details</dd>

</dl>

a_allele_plot	plot showing allele usage for each potential haplotyping gene
haplo_grobs	differential plot of allele usage for each usable haplotyping gene

make_haplo_grobs: Create haplotyping plots

Description

Usage

Value

Arguments

Examples