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ogrdbstats (version 0.5.4)

Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

Description

Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in .

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Install

install.packages('ogrdbstats')

Monthly Downloads

220

Version

0.5.4

License

CC BY-SA 4.0

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Maintainer

William Lees

Last Published

July 7th, 2025

Functions in ogrdbstats (0.5.4)

read_input_files

Read input files into memory
generate_ogrdb_report

Generate OGRDB reports from specified files.
genotype_statistics_cmd

Collect parameters from the command line and use them to create a report and CSV file
make_barplot_grobs

Create a barplot for each allele, showing number of reads distributed by mutation count
make_haplo_grobs

Create haplotyping plots
write_genotype_file

Write the genotype file required by OGRDB
example_rep

Example repertoire data
make_novel_base_grobs

Create plots showing base usage at selected locations in sequences based on novel alleles
write_plot_file

Create the OGRDB style plot file