write_genotype_file

Write the genotype file required by OGRDB

Multiple tools are now available for inferring the personalised
germ line set from an adaptive immune receptor repertoire.
Output from these tools is converted to
a single format and supplemented with rich data such as usage and
characterisation of 'novel' germ line alleles. This data can be
particularly useful when considering the validity of novel inferences. Use
of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.

William Lees

ogrdbstats

Analysis of Adaptive Immune Receptor Repertoire Germ Line
Statistics

write_genotype_file function

<dl><dt>filename</dt>
<dd>name of file to create (csv)</dd>
<dt>segment</dt>
<dd>one of V, D, J</dd>
<dt>chain_type</dt>
<dd>one of H, L</dd>
<dt>genotype</dt>
<dd>genotype data frame</dd></dl>

Arguments

Write the genotype file required by OGRDB — write_genotype_file

<dl>

<dt>filename</dt>
<dd>name of file to create (csv)</dd>


<dt>segment</dt>
<dd>one of V, D, J</dd>


<dt>chain_type</dt>
<dd>one of H, L</dd>


<dt>genotype</dt>
<dd>genotype data frame</dd>

</dl>

write_genotype_file: Write the genotype file required by OGRDB

Description

Usage

Value

Arguments

Examples