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onemap (version 0.1-1)

Software for constructing genetic maps in outcrossing species

Description

Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)

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Version

Install

install.packages('onemap')

Monthly Downloads

642

Version

0.1-1

License

GPL version 2 or newer

Maintainer

Gabriel Alves Margarido

Last Published

April 26th, 2025

Functions in onemap (0.1-1)

cr2pts

Call to the C routine for two-point analysis
arbitr.rf.2pts

Arbitrarily define the linkage phase between two markers
cr3pts

Call to the C routine for three-point analysis
onemap-package

Software for constructing genetic maps in outcrossing species
example_out

Data from a full-sib family derived from two outbred parents
mrktype

Type of segregation of a marker
est.rf.3pts

Three-point analysis of genetic markers
map

Estimate the genetic map
extract.group

Extracts a linkage group for further analysis
make.map

Manually define a genetic map
map_func

Mapping functions Haldane and Kosambi
read.outcross

Read data from a segregating full-sib population
remove.marker

Drop a marker from a linkage group
modify.rf.2pts

Update two-point analyses with new criteria
est.rf.2pts

Two-point analysis between genetic markers
group

Assign markers to linkage groups
acum

Cumulative sum
onemap-internal

Internal onemap functions
rcd

Rapid Chain Delineation