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onemap (version 0.1-1)
Software for constructing genetic maps in outcrossing species
Description
Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)
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3.0.0
2.8.2
2.8.1
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Install
install.packages('onemap')
Monthly Downloads
579
Version
0.1-1
License
GPL version 2 or newer
Homepage
http://www.r-project.org
Maintainer
Gabriel Alves Margarido
Last Published
June 9th, 2008
Functions in onemap (0.1-1)
Search functions
cr2pts
Call to the C routine for two-point analysis
arbitr.rf.2pts
Arbitrarily define the linkage phase between two markers
cr3pts
Call to the C routine for three-point analysis
onemap-package
Software for constructing genetic maps in outcrossing species
example_out
Data from a full-sib family derived from two outbred parents
mrktype
Type of segregation of a marker
est.rf.3pts
Three-point analysis of genetic markers
map
Estimate the genetic map
extract.group
Extracts a linkage group for further analysis
make.map
Manually define a genetic map
map_func
Mapping functions Haldane and Kosambi
read.outcross
Read data from a segregating full-sib population
remove.marker
Drop a marker from a linkage group
modify.rf.2pts
Update two-point analyses with new criteria
est.rf.2pts
Two-point analysis between genetic markers
group
Assign markers to linkage groups
acum
Cumulative sum
onemap-internal
Internal onemap functions
rcd
Rapid Chain Delineation