Informs the type of segregation of a marker from an object of class
rf.2pts, according to the notation by Wu et al., 2002.
Usage
mrktype(w, mrkname = NULL)
Arguments
w
an object of class rf.2pts.
mrkname
the name of a marker, corresponding to any marker in the
input file used for the two-point analyses stored in object w.
Value
A character string giving the type of segregation of marker
mrkname, according the above table.
Details
The segregation types are (Wu et al., 2002):
lcc{
Type Cross Segregation
A.1 ab x cd 1:1:1:1
A.2 ab x ac 1:1:1:1
A.3 ab x co 1:1:1:1
A.4 ao x bo 1:1:1:1
B1.5 ab x ao 1:2:1
B2.6 ao x ab 1:2:1
B3.7 ab x ab 1:2:1
C8 ao x ao 3:1
D1.9 ab x cc 1:1
D1.10 ab x aa 1:1
D1.11 ab x oo 1:1
D1.12 bo x aa 1:1
D1.13 ao x oo 1:1
D2.14 cc x ab 1:1
D2.15 aa x ab 1:1
D2.16 oo x ab 1:1
D2.17 aa x bo 1:1
D2.18 oo x ao 1:1
}
References
Wu, R., Ma, C.-X., Painter, I. and Zeng, Z.-B. (2002) Simultaneous
maximum likelihood estimation of linkage and linkage phases in
outcrossing species. Theoretical Population Biology 61: 349-363.